Guangchuang Yu

Rho is a collaborative analysis environment that organizes materials by scientific purpose to support human-AI judgment in bioinformatics.

ggalign provides a flexible R package for creating composable visualizations of complex, multi-dimensional biological data using layout options and annotation features.

EasyMultiProfiler provides a streamlined workflow for integrating and analyzing multi-omics microbiome data, addressing challenges in standardization and reproducibility.

IOBR2 is a tool for analyzing tumor microenvironment using multi-omics data, offering modules for preprocessing, estimation, interaction analysis, and visualization.

The paper introduces the fanyi package, an AI-driven tool for translating and retrieving gene information to overcome language barriers in research.

The paper introduces TIPars, an algorithm for efficiently expanding phylogenies with new genome sequences, showing it outperforms existing methods on multiple datasets.

Ggtree creates a serialized data object for visualizing phylogenetic trees with associated annotations, enabling data reuse and reproducibility.

IOBR is a computational tool that integrates multi-omics data to analyze tumor microenvironment and signatures, enabling batch analysis and comparison of immunotherapy-related features.

clusterProfiler performs over-representation (Fisher's exact test) and gene set enrichment analyses on Gene Ontology, KEGG, and user-supplied annotations, supporting non-model organisms, multi-condition comparisons, and ggplot2-based visualization.