Author

Petter Ranefall

Uppsala UniversityORCID 0000-0002-6699-4015Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genomics· 1 Neuroscience· 1

Signature Assays, Organisms & Methods

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Assay:imaging· 2 Organism:bacteria (other)· 1 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Approach:deep learning· 1 Approach:experimental assay· 1 Approach:statistical model· 1 Organism:zebrafish· 1

Frequent Co-Authors

Carolina WählbyiD· 2 shared Anastasia EmmanouilidouiD· 1 shared Anders Olof LarssoniD· 1 shared Benedikt von der HeydeiD· 1 shared Boyu LyuiD· 1 shared Chiung-Ting WuiD· 1 shared Congchao WangiD· 1 shared Erik HallströmiD· 1 shared

Activity by Year

2019-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 19 mutual co-author links

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2 shared papersBioinformatics

Carolina WählbyORCID

Mutual co-authors in cluster

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3 papers

Recent·Most cited

BioinformaticsPLoS Computational BiologyPeer-reviewedNov 13, 2023

Label-free deep learning-based species classification of bacteria imaged by phase-contrast microscopy

Erik Hallström, Vinodh K. Kandavalli, Petter Ranefall…·Carolina Wählby

The paper uses deep learning to classify bacteria species from phase-contrast microscopy images without staining or fixation, achieving over 98% accuracy.

20 citations

bacteria (other)imaging

𝕏 PostBluesky

NeuroscienceBioinformaticsPeer-reviewedOct 3, 2019

SynQuant: An Automatic Tool to Quantify Synapses from Microscopy Images

Yizhi Wang, Congchao Wang, Petter Ranefall…·Guoqiang Yu

SynQuant quantifies synapses from microscopy images by addressing antibody specificity, brightness heterogeneity, and noise, showing improved performance over existing tools in disease models.

69 citations

imagingstatistical model

𝕏 PostBluesky

GenomicsbioRxivPreprintJun 11, 2019

Zebrafish larvae as a model system for systematic characterization of drugs and genes in dyslipidemia and atherosclerosis

Manoj K Bandaru, Anastasia Emmanouilidou, Petter Ranefall…·Marcel den Hoed

The paper develops a zebrafish pipeline to study dyslipidemia and atherosclerosis, identifying potential causal genes and showing drug effects.

10 citations

zebrafishexperimental assay

𝕏 PostBluesky