Improving isoform-level eQTL and integrative genetic analyses of breast cancer risk with long-read RNA transcript assemblies
S. Taylor Head, Aryun Nemani, Yung-Han Chang…·Arjun Bhattacharya
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University of WashingtonORCID 0000-0002-7137-7281Unclaimed ORCID profile · follow to get notified of new preprints
Mutual co-authors in cluster
10 papers
Recent·Most cited
S. Taylor Head, Aryun Nemani, Yung-Han Chang…·Arjun Bhattacharya
Aidan O’Brien, Hyunkyung Kong, Harsh Patel…·Laufey Thora Amundadottir
The paper identifies functional variants and VNTRs at the 5p15.33 locus using fine-mapping, MPRA, and CRISPRi screens, revealing their role in cancer susceptibility through antagonistic pleiotropy.
Yung-Han Chang, Sean T. Bresnahan, S. Taylor Head…·Arjun Bhattacharya
This study identifies genetic risk mechanisms for six cancers by analyzing isoform-level expression data, finding more associations and greater heritability explained compared to gene-level analysis.
Maria Zanti, Denise G O'Mahony, Michael T. Parsons…·Gary Zirpoli
The paper uses case-control data from over 400,000 women to classify BRCA1 and BRCA2 variants, finding high consistency with ClinVar annotations for 785 previously unclassified variants.
Mwangala P. Akamandisa, Nicholas James Boddicker, Siddhartha Yadav…·Katherine L. Nathanson
This study evaluates breast cancer risks associated with pathogenic variant type and location in BRCA2 and other genes, finding differential risks based on variant position.
Nannan Wang, Bing Yu, Goo Jun…·Han Chen
StocSum generates stochastic summary statistics for whole genome sequencing studies without external reference panels, enabling various genetic analyses and improving utility for underrepresented populations.
Yuxi Liu, Hongjie Chen, John Heine…·Xia Jiang
This paper identifies genetic loci associated with mammographic texture variation and finds significant genetic correlations with breast cancer risk and mammographic density.
James W. MacDonald, Tabitha A. Harrison, Theo K. Bammler…·Sara Lindström
The paper creates ancestry-specific linkage disequilibrium block maps for GRCh38, providing updated LD blocks for four populations.
Nolan R. Cole, Paige Lee, Tommer Schwarz…·Arjun Bhattacharya
The paper identifies non-coding RNAs that mediate gene expression regulation in breast and prostate tissue and overlap with genetic signals for cancer susceptibility.
Siddhartha Kar, Sara Lindström, Rayjean J. Hung…·Rosalind A. Eeles
This study combines genome-wide association data from four cancers to identify shared and novel genetic associations and pleiotropic effects.