Mert Cihan

The paper introduces MAPPIE, a method to map human protein-protein interactions into a 2D space for functional discovery, outperforming baselines in sparse interaction regions.

The paper introduces MIRNAPEX, a framework that accounts for alternative polyadenylation to better understand miRNA differential expression by integrating target-gene expression and 3'UTR isoform usage.

This study uses machine learning to predict miRNA expression and identify genetic regulators, revealing miRNA-gene regulatory relationships and pathway-specific associations.

This study identifies IRF4 interactors and their role in regulating context-dependent transcriptional programs in Th17 and Treg cells using ChIP-Seq and proteomics.