Author

Eden Z. Deng

Icahn School of Medicine at Mount SinaiORCID 0000-0002-8717-4606Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2 Neuroscience· 1

Signature Assays, Organisms & Methods

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Organism:human· 3 Approach:statistical model· 3 Assay:bulk RNA-seq· 2 Research Focus:database / resource· 2 Research Focus:differential expression· 2 Organism:mouse· 2 Approach:benchmark study· 1 Assay:ChIP-seq· 1

Frequent Co-Authors

Avi Ma’ayaniD· 2 shared Daniel J. B. ClarkeiD· 2 shared Giacomo B. MarinoiD· 2 shared Alexander LachmanniD· 1 shared John Erol EvangelistaiD· 1 shared Zhuorui XieiD· 1 shared

Activity by Year

2018-2024 · peak 1/yr

Co-Author Collaboration Network

6 top collaborators · 13 mutual co-author links

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2 shared papersBioinformatics

Avi Ma’ayanORCID

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Author profile →

3 papers

Recent·Most cited

BioinformaticsPatternsPeer-reviewedOct 1, 2024

RummaGEO: Automatic Mining of Human and Mouse Gene Sets from GEO

Giacomo B. Marino, Daniel J. B. Clarke, Alexander Lachmann…·Avi Ma’ayan

RummaGEO automatically mines gene sets from GEO RNA-seq studies for human and mouse, enabling signature search and metadata analysis.

22 citations

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BioinformaticsbioRxivPreprintOct 3, 2023

Rummagene: Mining Gene Sets from Supporting Materials of PMC Publications

Daniel J. B. Clarke, Giacomo B. Marino, Eden Z. Deng…·Avi Ma’ayan

Rummagene extracts and provides access to gene sets from PMC publications for search and analysis, revealing trends and enabling functional predictions.

5 citations

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NeurosciencebioRxivPreprintOct 29, 2018

Molecular inflection points in the aging human brain

The paper identifies inflection points in age-related gene expression in human brain tissues and microglia, suggesting they may mark critical transitions in aging and neurodegenerative disease onset.

DOI 10.1101/455105

humanbulk RNA-seq

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