Kris Sankaran

scDeepSim generates synthetic single-cell data with controlled biological and technical factors to benchmark single-cell analysis methods.

scSketch allows interactive trajectory sketching and pathway-aware analysis of single-cell data, revealing infection-associated gradients in human oral keratinocytes.

phylobar provides an R package for interactive multiresolution compositional barplots to visualize hierarchical omics data, enabling exploration across taxonomic resolutions.

The paper introduces a software package to visualize distortion in nonlinear dimensionality reduction methods, showing how it can flag issues and aid in method selection.

The paper introduces the multimedia R package for mediation analysis of microbiome data, demonstrating its ability to uncover mechanistic interactions in two case studies.

This paper reviews simulation methods for microbiome data analysis, demonstrating their use in benchmarking, power analysis, and evaluating key properties of simulated data.

MolPad is an R-Shiny package that provides an interactive dashboard for analyzing longitudinal microbiome co-expression patterns through cluster-based network visualization and data integration.

This study quantifies variability in host proteins and bacterial taxa in stool samples from healthy individuals, showing greater inter-subject variation than temporal or technical variation.

This study uses a crowdsourcing approach to stratify ALS patients, identifying four distinct clusters with unique predictors and improving outcome prediction.