Author

Ivan N. Zheludev

Stanford UniversityORCID 0000-0002-9572-0574Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 2 Biophysics· 1 Genetics· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Approach:experimental assay· 2 Research Focus:gene regulatory network inference· 2 Organism:human· 2 Approach:biophysical modeling· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Research Focus:differential expression· 1

Frequent Co-Authors

George HendersoniD· 2 shared Julia SalzmaniD· 2 shared Kaitlin ChaungiD· 2 shared Peter Lincoln WangiD· 2 shared Rhiju DasiD· 2 shared Tavor Z. BaharaviD· 2 shared Ami Siddharth BhattiD· 1 shared Andrew Z. FireiD· 1 shared

Activity by Year

2020-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 14 mutual co-author links

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2 shared papersGenomics

George HendersonORCID

Mutual co-authors in cluster

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5 papers

Recent·Most cited

MicrobiologyCellPeer-reviewedOct 31, 2024

Viroid-like colonists of human microbiomes

Ivan N. Zheludev, R. C. Edgar, María José López-Galiano…·Andrew Z. Fire

The paper identifies a new class of viroid-like elements, Obelisks, prevalent in human microbiomes and capable of persistent colonization.

78 citationstop 1%

humanmetagenomics

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BiophysicsProceedings of the National Academy of SciencesPeer-reviewedMar 1, 2024

Tertiary folds of the SL5 RNA from the 5' proximal region of SARS-CoV-2 and related coronaviruses

Rachael C. Kretsch, Lily Xu, Ivan N. Zheludev…·Rhiju Das

This paper determines the 3D structures of SL5 RNA domains from six coronaviruses, revealing conserved tertiary features with implications for protein-binding and antiviral targets.

27 citations

humannon-human primate

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GenomicsCellPeer-reviewedDec 1, 2023

SPLASH: a statistical, reference-free genomic algorithm unifies biological discovery

Kaitlin Chaung, Tavor Z. Baharav, George Henderson…·Julia Salzman

SPLASH is a unifying, statistically driven approach to biological discovery from raw sequencing data, bypassing alignment.

24 citations

whole-genome sequencingstatistical model

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GenomicsbioRxivPreprintJul 17, 2023

SPLASH: a statistical, reference-free genomic algorithm unifies biological discovery

Kaitlin Chaung, Tavor Z. Baharav, George Henderson…·Julia Salzman

The paper was withdrawn due to duplicate posting and is no longer available for citation.

DOI 10.1101/2023.07.17.549408

𝕏 PostBluesky

GeneticsRNAPeer-reviewedMay 12, 2020

RNA genome conservation and secondary structure in SARS-CoV-2 and SARS-related viruses

Ramya Rangan, Ivan N. Zheludev, Rachel J. Hagey…·Rhiju Das

The paper identifies conserved RNA regions in SARS-CoV-2 and SARS-related viruses, predicts their secondary structures, and highlights potential antiviral and diagnostic targets.

282 citationstop 2%

viruslong-read sequencing

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