Whole genome association testing in 333,100 individuals across three biobanks identifies rare non-coding single variant and genomic aggregate associations with height
Gareth Hawkes, Robin N. Beaumont, Zilin Li…·Michael N. Weedon
Author
Broad InstituteORCID 0000-0002-9599-4866Unclaimed ORCID profile · follow to get notified of new preprints
24 papers
Recent·Most cited
Gareth Hawkes, Robin N. Beaumont, Zilin Li…·Michael N. Weedon
Victor D. Nauffal, Paolo Di Achille, Marcus D. R. Klarqvist…·Steven A. Lubitz
The paper uses machine learning to analyze myocardial T1 time in UK Biobank data, identifying genetic loci and pathways associated with interstitial fibrosis and related cardiovascular diseases.
Sean Joseph Jurgens, James P. Pirruccello, Seung Hoan Choi…·Patrick T. Ellinor
The paper shows adjusting for common variant polygenic scores improves rare variant association yield in 65 UK Biobank traits without increasing false positives.
Xin Wang, Justine H. Ryu, Jihoon Kim…·Seung Hoan Choi
The paper analyzes whole-genome sequences from 98,622 participants to identify common and rare variants associated with cardiometabolic traits, replicating known associations and finding new loci.
Xin Wang, Caitlin Ann Selvaggi, Lu-Chen C Weng…·Steven A. Lubitz
The paper imputes tissue-specific gene expression for 486,452 UK Biobank participants and demonstrates its use in prioritizing therapeutic targets and predicting phenotypic risk.
Margaret Sunitha Selvaraj, Xihao Li, Zilin Li…·Najib Ayas
The paper performs whole genome sequence analysis of plasma lipid levels in 66,329 individuals, identifying new lipid-associated alleles, including rare non-coding variants.
Jennifer L. Halford, Valerie N. Morrill, Seung Hoan Choi…·Steven A. Lubitz
The paper shows that variant effect sizes on quantitative endophenotypes support pathogenicity in monogenic disease genes.
Md Mesbah Uddin, Zhi Yu, Joshua S. Weinstock…·Pradeep Natarajan
This study analyzes clonal hematopoiesis in over a million diverse individuals, identifying 72 genome-wide significant loci and linking CHIP to various phenotypes.
James P. Pirruccello, Paolo Di Achille, Victor D. Nauffal…·Patrick T. Ellinor
The paper uses deep learning and genome-wide association studies to identify genetic loci associated with right heart structure and function in 40,000 individuals.
Adityanarayanan Radhakrishnan, Sam Freesun Friedman, Shaan S. Khurshid…·Caroline Uhler
This paper develops a cross-modal autoencoder framework to integrate cardiac MRI and ECG data, improving phenotype prediction and enabling MRI imputation from ECGs.
Victor D. Nauffal, Valerie N. Morrill, Sean Joseph Jurgens…·for the TOPMed Investigators
This study investigates how rare and common genetic variations contribute to QT interval duration, finding that both monogenic and polygenic factors influence QTc prolongation, with polygenic risk modulating the effect of rare variants.
Sean Joseph Jurgens, Seung Hoan Choi, Valerie N. Morrill…·Patrick T. Ellinor
The paper identifies 51 known and 23 novel gene-disease associations using exome sequencing data from 200,000 UK Biobank participants, highlighting high-impact rare variants for 26 diseases and traits.
James P. Pirruccello, Mark D. Chaffin, Elizabeth L. Chou…·Patrick T. Ellinor
This study uses deep learning to analyze aortic dimensions from MRI and identifies genetic loci associated with aortic diameter, highlighting SVIL as a key gene and developing a polygenic score for aneurysm risk.
Alan M. Kwong, Thomas W. Blackwell, Jonathon LeFaive…·Hyun Min Kang
This paper introduces RUTH, a new HWE test that accounts for population structure and genotype uncertainty, showing it reduces false positives compared to traditional methods.
Jennifer Wessel, Timothy D. Majarian, Heather M. Highland…·José C. Florez
The paper identifies rare non-coding variants from whole genome sequencing in the TOPMed program, showing they contribute significantly to type 2 diabetes heritability.
Lasse Folkersen, Stefan Gustafsson, Qin Wang…·Anders Mälarstig
The paper identifies pQTLs for cardiovascular proteins and uses them to evaluate drug targets and suggest new candidates for precision medicine.
James P. Pirruccello, Alexander G. Bick, Minxian Wang…·Krishna G. Aragam
This study identifies 26 novel genetic loci associated with cardiac structure and function using MRI data from 29,041 individuals and links them to dilated cardiomyopathy risk.
Madeline H. Kowalski, Huijun Qian, Ziyi Hou…·Yun Li
This study uses TOPMed whole genome sequences to improve imputation quality and detect rare variant associations in admixed African and Hispanic/Latino populations, identifying two novel associations with hematological traits.
Alexander G. Bick, Joshua S. Weinstock, Satish Kumar Nandakumar…·Eric Boerwinkle
The paper identifies germline genetic variants associated with clonal hematopoiesis of indeterminate potential (CHIP) using whole genome sequences from the TOPMed program.
Jonas Bille Nielsen, Oren Rom, Ida L. Surakka…·Y. Eugene Chen
The paper identifies loss-of-function variants affecting liver-related blood traits that reduce CVD risk without increasing metabolic disease risk, highlighting potential therapeutic targets.
Sara L. Pulit, Lu-Chen C Weng, Patrick F. McArdle…·Eric Boerwinkle
The paper assesses if genetic risk for atrial fibrillation explains cardioembolic stroke risk using genome-wide data from the Stroke Genetics Network.
Amit V. Khera, Mark D. Chaffin, Krishna G. Aragam…·Sekar Kathiresan
A genome-wide polygenic score identifies individuals with a 4-fold increased risk for coronary disease, similar to a rare monogenic mutation.
Jianan Zhana, CHARGE ECG Working Group, Jessica van Setten…·Steven Ron Cummings
This paper introduces SAPPHO methods to detect pleiotropy in GWAS by modeling shared patterns of genetic associations, finding 16 additional and 124 novel loci in meta-analysis.
Jessica van Setten, Jennifer A. Brody, Yalda Jamshidi…·Paolo Gasparini
This study identifies 47 novel genetic loci associated with PR interval through genome-wide association meta-analysis across multiple populations.