Andrey L. Konevega

DSSNA v2026 analyzes nucleic acid structures in MD simulations, identifying base pairs, hydrogen bonds, and stacking interactions, showing that canonical pairs are stable while non-canonical ones are transient.

This paper introduces a fluorescence-based microscale platform to study bacterial translation initiation, revealing the dissociation constant of streptomycin and the effect of antimicrobial peptides.

This paper identifies a novel mechanism by which Bottromycin A2 inhibits bacterial translation through context-specific ribosome stalling at glycine codons.

This study investigates how an amyloidogenic peptide binds to DNA, showing its structural interactions and effects on DNA function.

This paper introduces a new algorithm in Gromacs to determine hydrogen bonds in biomacromolecules, overcoming previous limitations and validating results with experimental data.

The paper introduces a fast implementation of the DSSP algorithm within Gromacs for analyzing protein secondary structures in molecular dynamics trajectories.

This paper investigates how thermorubin inhibits translation by causing ribosome stalling and affecting tRNA binding and translation elongation.

This study reveals the kinetic mechanisms and conformational changes of bacterial IF3 during translation initiation.