Author

Tamara Y. Lopez-Vidal

Johns Hopkins UniversityORCID 0000-0003-0618-7008Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioengineering· 1 Immunology· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:clustering· 2 Assay:imaging· 2 Approach:statistical model· 2 Research Focus:batch correction / integration· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Approach:deep learning· 1

Frequent Co-Authors

Elana Judith FertigiD· 3 shared Daniel R. BergmaniD· 2 shared Elizabeth M. JaffeeiD· 2 shared Eric M. CrameriD· 2 shared Jacquelyn W. ZimmermaniD· 2 shared Jeanette JohnsoniD· 2 shared Laura M. HeiseriD· 2 shared Luciane Tsukamoto KagoharaiD· 2 shared

Activity by Year

2024-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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3 shared papersBioengineering

Elana Judith FertigORCID

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3 papers

Recent·Most cited

BioengineeringCell Reports MethodsPeer-reviewedNov 18, 2025

Automated Quality Control of Time-Course Imaging from 3D in vitro cultures

Eric M. Cramer, Tamara Y. Lopez-Vidal, Jeanette Johnson…·Young Hwan Chang

The paper introduces an algorithm to correct mislabeling and align object positions in longitudinal 3D cell culture imaging, improving data integrity and reproducibility.

DOI 10.1016/j.crmeth.2025.101237

imagingdeep learning

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Systems BiologyCellPeer-reviewedJul 26, 2025

Digitize your Biology! Modeling multicellular systems through interpretable cell behavior

Jeanette Johnson, Daniel R. Bergman, Heber Lima da Rocha…·Paul Macklin

The paper introduces a framework for mathematical modeling of multicellular systems using interpretable cell behavior rules derived from biological knowledge and multi-omics data.

67 citationstop 1%

statistical modelsoftware / tool

𝕏 PostBluesky

ImmunologyNature ImmunologyPeer-reviewedOct 25, 2024

Immune landscape of tertiary lymphoid structures in hepatocellular carcinoma (HCC) treated with neoadjuvant immune checkpoint blockade

Daniel H. Shu, Won Jin Ho, Luciane Tsukamoto Kagohara…·Mark M. Yarchoan

This study examines TLS in HCC treated with neoadjuvant immunotherapy, finding TLS correlate with better outcomes and show distinct morphological and functional features in tumor regression.

176 citationstop 1%

humanbulk RNA-seq

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