Author

Jasper Braun

Beth Israel Deaconess Medical CenterORCID 0000-0003-1250-4399Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genomics· 1 Immunology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Research Focus:cell type annotation· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Organism:human· 1 Assay:metagenomics· 1 Assay:proteomics· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Laura F. LandweberiD· 2 shared Nataša JonoskaiD· 2 shared Rafik NemeiD· 2 shared Ai-ris Yonekura CollieriD· 1 shared Alexandra MorganiD· 1 shared Andrea KirmaieriD· 1 shared Cody J. CallahaniD· 1 shared Dan H. BarouchiD· 1 shared

Activity by Year

2018-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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2 shared papersBioinformatics

Laura F. LandweberORCID

Mutual co-authors in cluster

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3 papers

Recent·Most cited

ImmunologyPLoS ONEPeer-reviewedMar 27, 2026

Contrasting Effects of SARS-CoV-2 Vaccination vs. Infection on Antibody and TCR Repertoires

Jasper Braun, Elliot D. Hill, Elisa Contreras…·Ramy Arnaout

This study compares antibody and TCR repertoires in SARS-CoV-2 infectees, vaccinees, and controls to predict neutralizing antibody titers and identifies subtle differences in adaptive immune responses.

1 citation

humanproteomics

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BioinformaticsNAR Genomics and BioinformaticsPeer-reviewedOct 4, 2023

SDRAP for annotating scrambled or rearranged genomes

Jasper Braun, Rafik Neme, Yi Feng…·Nataša Jonoska

SDRAP improves DNA rearrangement annotation by providing complete mappings, transparency, and flexibility for analyzing genomic data from different sources.

2 citations

whole-genome sequencingexperimental assay

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GenomicsG3 Genes Genomes GeneticsPeer-reviewedMar 15, 2018

Russian Doll Genes and Complex Chromosome Rearrangements in Oxytricha trifallax

Jasper Braun, Lukas Nabergall, Rafik Neme…·Nataša Jonoska

The paper describes the germline organization of highly scrambled genes in Oxytricha trifallax and introduces mathematical methods to analyze nesting and scrambling in chromosome rearrangements.

10 citations

statistical model

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