Author
University of California, Santa CruzORCID 0000-0003-1485-080XUnclaimed ORCID profile · follow to get notified of new preprints
3 papers
Recent·Most cited
Pooria Daneshvar Kakhaki, Stuart Akeson, Neda Ghohabi Esfahani…·Miten Jain
tRNAZAP is a deep learning toolkit for analyzing nanopore tRNA sequencing data, achieving high accuracy in segmentation and classification tasks.
Margaret L. Barry, Robin L. Abu-Shumays, Lauren E. Barnes…·David M. Garcia
The paper identifies 21 novel pseudouridine sites in S. cerevisiae tRNAs using DRS and BACS, and maps their modifying enzymes.
Stuart Akeson, Pooria Daneshvar Kakhaki, Neda Ghohabi Esfahani…·Miten Jain
The paper introduces tRNAZAP, a deep learning method using nanopore ionic current signals to classify tRNA isodecoders, achieving better alignment results than BWA-MEM in E. coli and S. cerevisiae.