Adam Voshall

The paper presents a hybrid transcriptome assembly and annotation of Japanese macaque prefrontal cortex using short- and long-read RNA sequencing data.

STRUMP-I improves pMHC-I binding prediction by using force-field energy features, outperforming sequence-based methods on underrepresented MHC alleles and showing synergy with them.

The paper identifies cancer-specific transposon-fusion RNAs across 34 cancer types and finds they are associated with tumor suppressors and oncogenes, and can activate T-cells.

The paper identifies a novel class of long small RNAs in Chlamydomonas that associate with AGO1 and are upregulated under nutrient deprivation.

The paper introduces ConSemble, a consensus-based ensemble method for transcriptome assembly that improves accuracy by combining multiple assemblers, outperforming individual methods in both de novo and genome-guided scenarios.