Author
University of Central FloridaORCID 0000-0003-2708-9933Unclaimed ORCID profile · follow to get notified of new preprints
5 papers
Recent·Most cited
Nathaniel K Brown, Ahsan Sanaullah, Pramesh Shakya…·Ben Langmead
The paper introduces ms2, a suite of algorithms for efficiently computing matching statistics and SMEMs in compressed pangenome indexes, achieving significant speedups over existing methods.
Ahsan Sanaullah, Nathaniel K. Brown, Pramesh Shakya…·Shaojie Zhang
The paper introduces algorithms for constructing RLBWT-based compressed full text indexes in compressed space, reducing memory usage for large-scale pangenome analysis.
Pramesh Shakya, Ahsan Sanaullah, Degui Zhi, Shaojie Zhang
This paper introduces Dynamic μ-PBWT, a memory-efficient data structure for dynamic updates of haplotype panels, supporting efficient queries and reducing memory usage compared to existing methods.
Pramesh Shakya, Ardalan Naseri, Degui Zhi, Shaojie Zhang
The paper introduces mcPBWT, an algorithm for efficiently scanning composite haplotype patterns in PBWT data, identifying crossover events and gene-conversion tracts.
Ardalan Naseri, Kecong Tang, Xin Geng…·Degui Zhi
The paper infers genealogical history and social behaviors from IBD segments in UK Biobank data, revealing population-scale genetic connections and regional family preferences.