Author

Pierre Amato

Centre National de la Recherche ScientifiqueORCID 0000-0003-3168-0398Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Ecology· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Assay:metagenomics· 3 Research Focus:benchmarking· 2 Research Focus:cell signaling & trafficking· 1 Approach:comparative / phylogenetic analysis· 1 Research Focus:database / resource· 1 Research Focus:ecology & biodiversity· 1 Approach:experimental assay· 1 Research Focus:host-pathogen & immune response· 1

Frequent Co-Authors

Raphaëlle PéguilhaniD· 3 shared Bérénice BatutiD· 2 shared Engy Mohamed Taha NasriD· 2 shared Florent RossiiD· 2 shared Muriel JolyiD· 2 shared Andrew StubbsiD· 1 shared Anshu BhardwajiD· 1 shared Ashwani Kumar· 1 shared

Activity by Year

2023-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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3 shared papersBioinformatics

Raphaëlle PéguilhanORCID

Mutual co-authors in cluster

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3 papers

Recent·Most cited

BioinformaticsCommunications BiologyPeer-reviewedOct 29, 2026

Microbiology Galaxy Lab: The first community-driven gateway for reproducible and FAIR analysis of microbial data

Engy Mohamed Taha Nasr, Nikolaos Pechlivanis, Nikolaos Strepis…·Bérénice Batut

The paper introduces the Microbiology Galaxy Lab, a community-driven platform for reproducible and FAIR microbial data analysis, offering tools for various omics data types and use cases.

5 citationstop 1%

metagenomicsexperimental assay

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EcologybioRxivPreprintDec 14, 2023

Clouds, oases for airborne microbes - Differential metagenomics/ metatranscriptomics analyses of cloudy and clear atmospheric situations

Raphaëlle Péguilhan, Florent Rossi, Muriel Joly…·Pierre Amato

The paper compares metagenomics/metatranscriptomics of cloudy and clear atmospheric conditions, showing clouds activate microbial metabolic functions similar to soil rewetting.

2 citations

metagenomicsmetabolomics

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MicrobiologybioRxivPreprintOct 10, 2023

Experimental and methodological framework for the assessment of nucleic acids in airborne microorganisms

Raphaëlle Péguilhan, Florent Rossi, Olivier Rué…·Pierre Amato

This paper evaluates best practices for studying airborne microorganisms using molecular methods and finds that replication and contamination control improve data reliability.

4 citations

metagenomicsstatistical model

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