Author

Sakina‐Dorothée Ayata

Centre National de la Recherche ScientifiqueORCID 0000-0003-3226-9779Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Ecology· 1 Evolutionary Biology· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Research Focus:gene regulatory network inference· 2 Assay:metagenomics· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:chromatin & epigenetic regulation· 1 Research Focus:clustering· 1 Approach:comparative / phylogenetic analysis· 1 Research Focus:development & morphogenesis· 1

Frequent Co-Authors

Lucie BittneriD· 2 shared Pavla DebeljakiD· 2 shared Alexandre SchickeleiD· 1 shared Amy E. MaasiD· 1 shared Arnaud MengiD· 1 shared Astrid CornilsiD· 1 shared Dylan Klein· 1 shared Éric PelletieriD· 1 shared

Activity by Year

2023-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 17 mutual co-author links

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2 shared papersEcology

Lucie BittnerORCID

Mutual co-authors in cluster

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3 papers

Recent·Most cited

Evolutionary BiologybioRxivPreprintNov 5, 2025

Hypoxia adaptation shapes genomic architecture and vertical niche transitions in copepods

Kevin Sugier, Romuald Laso‐Jadart, Loic Dorval…·Mohammed‐Amin Madoui

This study investigates how hypoxia adaptation shaped genomic architecture and niche transitions in copepods using phylogenetic and transcriptomic analyses.

DOI 10.1101/2025.11.05.686523

multiple speciesbulk RNA-seq

𝕏 PostBluesky

EcologyScience AdvancesPeer-reviewedAug 16, 2024

Picoeukaryotic photosynthetic potential is functionally redundant but taxonomically structured at global scale

Alexandre Schickele, Pavla Debeljak, Sakina‐Dorothée Ayata…·Jean‐Olivier Irisson

The paper uses machine learning to analyze metagenomic data and shows that C4-photosynthesis genomic potential in picoeukaryotes is functionally redundant but taxonomically structured globally.

4 citations

metagenomicsmachine learning (classical)

𝕏 PostBluesky

GenomicsISME CommunicationsPeer-reviewedFeb 28, 2023

Beyond the limits of the unassigned protist microbiome: inferring large-scale spatio-temporal patterns of marine parasites

Iris Rizos, Pavla Debeljak, Thomas Finet…·Lucie Bittner

The paper develops a computational workflow to analyze unassigned protist genetic barcodes across marine surveys, identifying spatio-temporal patterns in Syndiniales parasites.

25 citations

metagenomicsstatistical model

𝕏 PostBluesky