Author

Eelco Franz

National Institute for Public Health and the EnvironmentORCID 0000-0003-3707-8648Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 2 Microbiology· 2

Signature Assays, Organisms & Methods

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Approach:statistical model· 4 Assay:whole-genome sequencing· 3 Organism:bacteria (other)· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1 Organism:E. coli· 1

Frequent Co-Authors

Claudia E. CoipaniD· 2 shared Lapo Mughini‐GrasiD· 2 shared Timothy J. DallmaniD· 2 shared Aldert ZomeriD· 1 shared Alexandra MouraiD· 1 shared Alexandre LeclercqiD· 1 shared Ana AmaroiD· 1 shared Andra Neefjes‐BorstiD· 1 shared

Activity by Year

2021-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 19 mutual co-author links

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2 shared papersMicrobiology

Claudia E. CoipanORCID

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

GenomicsbioRxivPreprintApr 28, 2026

Population analysis and host-disease associations of Shiga toxin-producing Escherichia coli from various sources across eleven European countries using whole genome sequencing

Rosangela Tozzoli, Tristan Schadron, Arnold Knijn…·Camilla Sekse

This paper analyzes STEC population structure and host-disease associations using whole genome sequencing of 3,418 isolates from 11 European countries, identifying distinct subpopulations linked to disease severity.

DOI 10.64898/2026.04.27.721056

E. coliwhole-genome sequencing

𝕏 PostBluesky

MicrobiologyCell ReportsPeer-reviewedNov 1, 2024

Colon cancer and cell transformation by clinical Salmonella strains are associated with bacterial virulence and intracellular fitness

Virginie Stévenin, Claudia E. Coipan, Janneke W. Duijster…·Jacques Neefjes

The paper compares NTS strains associated with colon cancer to controls, finding higher transformation efficiency in case strains linked to gene expression and metabolic traits.

6 citations

humanwhole-genome sequencing

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MicrobiologybioRxivPreprintOct 28, 2024

Genome Analyses of A Worldwide Multisource Collection of Klebsiella variicola Reveal Adaptation Relevant for Human Infection

Jiayu Wang, Claudia E. Coipan, Eelco Franz…·Thamarai Schneiders

This study analyzes the genome of Klebsiella variicola from diverse sources to identify genetic adaptations linked to human infection.

DOI 10.1101/2024.10.28.617863

bacteria (other)whole-genome sequencing

𝕏 PostBluesky

GenomicsScience AdvancesPeer-reviewedDec 1, 2021

Emergence and global spread of Listeria monocytogenes main clinical clonal complex

Alexandra Moura, Noémie Lefrancq, Alexandre Leclercq…·for the Listeria CC1 Study Group

This study traces the global spread of Listeria monocytogenes clonal complex 1 (Lm-CC1) through historical data, identifying two waves of expansion linked to livestock trade and cattle farming.

67 citationstop 2%

bacteria (other)statistical model

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