Author

Urja Parekh

German Cancer Research CenterORCID 0000-0003-3834-7010Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:human· 2 Assay:scRNA-seq· 2 Research Focus:cell-cell communication· 1 Research Focus:chromatin & epigenetic regulation· 1 Research Focus:clustering· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1

Frequent Co-Authors

Aurélie ErnstiD· 2 shared Jan Otoničar· 2 shared Jan‐Philipp MallmiD· 2 shared Milena Simovic-LorenziD· 2 shared Pooja SantiD· 2 shared Albert Li· 1 shared Andreas KienzleiD· 1 shared Angelika Beate RiemeriD· 1 shared

Activity by Year

2024-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 39 mutual co-author links

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2 shared papersCancer Biology

Aurélie ErnstORCID

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2 papers

Recent·Most cited

Cancer BiologybioRxivPreprintJul 30, 2025

Integrative spatial and multi-omic profiling in bladder cancer links L1 retrotransposition to extrachromosomal DNA, genomic instability, and viral mimicry response

Sophia J. Pribus, Ivana Osredek, Jan Otoničar…·Aurélie Ernst

This study integrates spatial and multi-omic data from bladder cancer patients to show L1 retrotransposition drives genomic instability, ecDNA formation, and a viral mimicry response.

2 citations

humanscRNA-seq

𝕏 PostBluesky

Cancer BiologyGenome biologyPeer-reviewedDec 18, 2024

HIPSD&R-seq enables scalable genomic copy number and transcriptome profiling

Jan Otoničar, Olga Lazareva, Jan‐Philipp Mallm…·Aurélie Ernst

HIPSD&R-seq profiles genomic copy number and transcriptomes in thousands of cells, enabling rare clone detection in human cell models and primary tissue.

8 citations

humanscRNA-seq

𝕏 PostBluesky