Author
University of California San DiegoORCID 0000-0003-3848-7267Unclaimed ORCID profile · follow to get notified of new preprints
Mutual co-authors in cluster
3 papers
Recent·Most cited
Siavash R. Dehkordi, Zhaoyang Jia, Joey C. Estabrook…·Vineet Bafna
OMKar generates virtual karyotypes from optical genome mapping data to identify constitutional abnormalities with high precision and recall.
Siavash R. Dehkordi, Ivy Tsz-Lo Wong, Jing Ni…·Vineet Bafna
The paper introduces OM2BFB, an algorithm detecting BFB amplifications using OGMs, showing high precision and recall, and finds BFB events are common in certain cancers but not linked to intratumoral heterogeneity or rapid genome change.
Jens Luebeck, Ceyda Çoruh, Siavash R. Dehkordi…·Vineet Bafna
AmpliconReconstructor integrates optical mapping and NGS to resolve focal amplifications in cancer, revealing complex structures and origins of ecDNA and other rearrangements.