Author

Michela Riba

IRCCS Ospedale San RaffaeleORCID 0000-0003-4857-2027Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2 Cancer Biology· 1 Developmental Biology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Research Focus:database / resource· 2 Research Focus:variant calling· 2 Assay:whole-genome sequencing· 2 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1

Frequent Co-Authors

David TorrentsiD· 2 shared Elisa BenettiiD· 2 shared Gabriele BucciiD· 2 shared Giovanni TononiD· 2 shared Marco J. MorelliiD· 2 shared Aedín C. CulhaneiD· 1 shared Alfonso ValenciaiD· 1 shared Anders EdsjöiD· 1 shared

Activity by Year

2020-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 40 mutual co-author links

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2 shared papersBioinformatics

David TorrentsORCID

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4 papers

Recent·Most cited

BioinformaticsbioRxivPreprintApr 3, 2026

Anonymized Somatic Tumor Twins (STTs) enable open genome data sharing and use in research and clinical oncology

Nicolás Gaitán, Rodrigo Martín, Daniel Velasco…·David Torrents

The paper introduces GenomeAnonymizer, a method to anonymize tumor-normal DNA sequences, creating STTs that preserve somatic variants and enable open research while protecting privacy.

DOI 10.64898/2026.04.01.715771

humanwhole-genome sequencing

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BioinformaticsbioRxivPreprintFeb 10, 2026

A methodological framework for accommodating Cancer Genomics Information in OMOP-CDM using Variation Representation Specification (VRS).

Elisa Benetti, Guido Scicolone, Muhammad Tajwar…·Michela Riba

The paper proposes a method to integrate cancer genomics data into the OMOP CDM using KOIOS-VRS, a pipeline that converts VCF files into OMOP-compatible formats.

DOI 10.64898/2026.02.09.702490

whole-exome sequencingstatistical model

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Cancer BiologyNature GeneticsPeer-reviewedMay 1, 2024

The Minimal Dataset for Cancer of the 1+Million Genomes Initiative

Michela Riba, Cinzia Felicita Sala, Aedín C. Culhane…·Giovanni Tonon

The paper develops a standardized data model for cancer genomics to enable interoperable data sharing across countries.

9 citations

whole-genome sequencingbenchmark study

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Developmental BiologyDevelopmentPeer-reviewedJan 1, 2020

ZFP423 regulates early patterning and multiciliogenesis in the hindbrain choroid plexus

Filippo Casoni, Laura Croci, Francesca Vincenti…·G. Giacomo Consalez

This study shows that ZFP423 is essential for hindbrain choroid plexus development, regulating early patterning and multiciliogenesis through gene expression and cell fate specification.

21 citations

mousebulk RNA-seq

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