Author

Zhenxing Geng

University of Science and Technology of ChinaORCID 0009-0000-4490-187XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Plant Biology· 2 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Research Focus:gene regulatory network inference· 3 Organism:Arabidopsis· 2 Research Focus:cell type annotation· 2 Research Focus:differential expression· 2 Assay:scRNA-seq· 2 Approach:statistical model· 2 Approach:experimental assay· 1 Organism:human· 1

Frequent Co-Authors

Shisong MaiD· 3 shared Yifan WangiD· 3 shared Yue QiniD· 2 shared Yuming PengiD· 2 shared Yupu XuiD· 2 shared Ershang Han· 1 shared Haiying GengiD· 1 shared Y.–H. LiuiD· 1 shared

Activity by Year

2023-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 39 mutual co-author links

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3 shared papersPlant Biology

Shisong MaORCID

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3 papers

Recent·Most cited

BioinformaticsbioRxivPreprintOct 29, 2025

A gene program dictionary of human cells

Yupu Xu, Yifan Wang, Zhenxing Geng…·Shisong Ma

The paper introduces GPD, a framework using gene co-expression programs to create an organism-wide cell atlas, revealing disease-related gene programs across tissues.

DOI 10.1101/2025.10.29.685322

humanscRNA-seq

𝕏 PostBluesky

Plant BiologyJournal of genetics and genomics/Journal of Genetics and GenomicsPeer-reviewedMay 19, 2024

Stomatal maturomics: identifying genes regulating guard cell maturation and function formation from single-cell transcriptomes

Yuming Peng, Y.–H. Liu, Yifan Wang…·Shisong Ma

The paper identifies 586 genes up-regulated during stomata maturation using single-cell RNA-seq data and shows two TFs regulate guard cell size and function.

10 citations

ArabidopsisscRNA-seq

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Plant BiologybioRxivPreprintOct 9, 2023

Data-driven optimization yielded a highly-efficient CRISPR/Cas9 system for gene editing in Arabidopsis

Haiying Geng, Yifan Wang, Yupu Xu…·Shisong Ma

The paper develops a CRISPR/Cas9 system for Arabidopsis using the NUC1 promoter, achieving high editing efficiency and stable inheritance in the T2 generation.

7 citations

Arabidopsisexperimental assay

𝕏 PostBluesky