Author

Lena Krockenberger

University of California San DiegoORCID 0009-0002-5987-5496Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Cancer Biology· 1 Genomics· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Organism:human· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:clustering· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Research Focus:eQTL / molecular QTL mapping· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Aditi GnanasekariD· 1 shared Amanda RantaiD· 1 shared Andrew Y. LuiD· 1 shared Andy Dahl· 1 shared Andy Wing Chun PangiD· 1 shared Ann H. CapliniD· 1 shared Biswanath ChowdhuryiD· 1 shared Brunilda BalliuiD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

1 shared paperCancer Biology

Aditi GnanasekarORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

GenomicsCell GenomicsPeer-reviewedMay 18, 2026

FastGxC: Fast and Powerful Context-Specific eQTL Mapping in Bulk and Single-Cell Data

Lena Krockenberger, Andrew Y. Lu, Mike Thompson…·Brunilda Balliu

FastGxC efficiently maps context-specific eQTLs in bulk and single-cell RNA-seq data, improving power and speed while enhancing biological relevance and trait association precision.

3 citationstop 1%

humanbulk RNA-seq

𝕏 PostBluesky

Cancer BiologyNature CommunicationsPeer-reviewedFeb 10, 2025

Breakage fusion bridge cycles drive high oncogene copy number, but not intratumoral genetic heterogeneity or rapid cancer genome change

Siavash R. Dehkordi, Ivy Tsz-Lo Wong, Jing Ni…·Vineet Bafna

The paper introduces OM2BFB, an algorithm detecting BFB amplifications using OGMs, showing high precision and recall, and finds BFB events are common in certain cancers but not linked to intratumoral heterogeneity or rapid genome change.

30 citationstop 1%

humanwhole-genome sequencing

𝕏 PostBluesky