Author

Sakshar Chakravarty

University of California, RiversideORCID 0009-0002-6002-5229Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Bioinformatics· 2 Microbiology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:statistical model· 3 Assay:whole-genome sequencing· 2 Organism:Arabidopsis· 1 Research Focus:chromatin & epigenetic regulation· 1 Assay:DNA methylation· 1 Research Focus:gene regulatory network inference· 1 Research Focus:genome assembly· 1 Research Focus:GWAS / association mapping· 1

Frequent Co-Authors

Stefano LonardiiD· 2 shared Acramul Haque KabiriD· 1 shared Alejandro Sánchez‐FloresiD· 1 shared Atif Hasan RahmaniD· 1 shared BERNARD CARCY· 1 shared Choukri Ben MamouniD· 1 shared Delphine DepoixiD· 1 shared Emmanuel CornillotiD· 1 shared

Activity by Year

2023-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 23 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersMicrobiology

Stefano LonardiORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

MicrobiologyEmerging Microbes & InfectionsPeer-reviewedAug 16, 2024

Multiomics analysis reveals B. MO1 as a distinct Babesia species and provides insights into its evolution and virulence.

Pallavi Singh, Pratap Vydyam, Tiffany Fang…·Choukri Ben Mamoun

The paper identifies B. MO1 as a distinct Babesia species through multiomics analysis, revealing genomic and functional differences from B. divergens and insights into their evolution and virulence.

22 citationstop 1%

DNA methylationwhole-genome sequencing

𝕏 PostBluesky

BioinformaticsPlant DirectPeer-reviewedJun 1, 2024

Genome Wide Association Studies on 7 Yield-related Traits of 183 Rice Varieties in Bangladesh

Nilanjan Roy, Acramul Haque Kabir, Nourin Zahan…·Md. Shamsuzzoha Bayzid

This study conducts GWAS on 7 yield-related traits in 183 Bangladeshi rice landraces, identifying chromosomal regions and genes associated with grain shape and leaf traits.

9 citations

GWAS summary statisticsstatistical model

𝕏 PostBluesky

BioinformaticsbioRxivPreprintMay 26, 2023

RAmbler: de novo genome assembly of complex repetitive regions

Sakshar Chakravarty, Glennis A. Logsdon, Stefano Lonardi

RAmbler improves de novo genome assembly of complex repetitive regions using high-quality long reads, outperforming existing tools on synthetic and real data.

1 citation

Arabidopsiswhole-genome sequencing

𝕏 PostBluesky