Yuanyuan Qi

Sapling infers and summarizes tumor phylogenies from bulk data using backbone trees, demonstrating high-quality results on simulated and real data.

The paper introduces fastppm, a fast tool for solving the regression problem in tumor phylogeny reconstruction, achieving significant speedups and accuracy improvements.

TRIBAL infers B cell lineage trees from scRNA-seq data by integrating isotype information, improving accuracy in capturing somatic mutations and class switch dynamics.