Sign in
Plant BiologybioRxiv
Preprint

Diversification of the "EDVID" packing motif underpins structural and functional variation in plant NLR coiled-coil domains

Oliver SulkowskiiD, Anna Ovodova, Andrea Leisse A, Keelan Gögelein, Alexander FördereriD

Abstract

O_LINucleotide-binding leucine-rich repeat receptors (NLRs) are critical in plant immunity and display remarkable allelic diversity. Coiled-coiled NLRs (CC-NLRs) are the most widespread group of these receptors found across flowering and non-flowering plants. C_LIO_LIHere we investigate the sequence conservation and functional variation of the conserved EDVID motif found in the 3-helix of the cell death inducing CC domain of plant NLRs. We analyse our findings in context of published protein structures and structure prediction. C_LIO_LIWe find that the conserved EDVID motif can serve as a predictor of canonical CC-NLR function and oligomeric assembly. C_LIO_LIWe also find that the EDVID motif is accompanied by preceding acidic residues in certain CC-NLRs with homology to the Arabidopsis CC-NLR RPP8. The appearance of this so-called preEDVID motif across the phylogeny of flowering plants and its contribution to the CC-NLR function underpins the structural diversity across NLRs with EDVID motif. C_LIO_LIWe further show that CC-NLRs exist that have lost the EDVID motif sequence and function suggesting that this subgroup, previously referred to as CCG10-NLRs, functions in a different manner from the canonical mechanism. C_LIO_LIWe find that acidic residues located to the 3-helix of the helper NLR NRG1.1 are linked to NRG1.1 cell death inducing activity. C_LI

PDFDOI

02 /Specification & Classification

Click any tag to browse matching papers

Reproducibility ledger

Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.

Sign in to file a reproducibility report.