Sign in
Systems BiologyCell Reports
Peer-reviewed journal article

Decoding cellular deformation from pseudo-simultaneously observed Rho GTPase activities

Katsuyuki KunidaiD, Nobuhiro Takagi, Kazuhiro AokiiD, Kazushi IkedaiD, Takeshi NakamuraiD, Yuichi SakumuraiD

Abstract

The inability to simultaneously observe all of the important Rho GTPases (Cdc42, Rac1, and RhoA) has prevented us from obtaining evidence of their coordinated regulation during cell deformation. Here, we propose Motion-Triggered Average (MTA), an algorithm that converts individually observed GTPases into pseudo-simultaneous observations. Using the time series obtained by MTA and mathematical model, we succeeded for the first time in decoding the cell edge velocity from the three GTPase activities to provide clear numerical evidence for coordinated cell edge regulation by the three GTPases. We found that the characteristics of the obtained activities were consistent with those of previous studies, and that GTPase activities and their derivatives were involved in edge regulation. Our approach provides an effective strategy for using single-molecule observations to elucidate problems hampered by the lack of simultaneous observations.

PDFDOI

02 /Specification & Classification

Click any tag to browse matching papers
Citations
5
FWCI
0.44
Field percentile
top 49%

Reproducibility ledger

Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.

Sign in to file a reproducibility report.