Gut microbiota and health

This paper introduces an algorithm to design minimal microbiomes capable of specific functions while maintaining community properties, demonstrating its application on gut model communities.

This case report evaluates fecal microbiota transplantation (FMT) in a domestic ferret with chronic diarrhea, showing microbiome changes but variable clinical outcomes.

This study identifies distinct social and environmental transmission routes of gut microbes in wild mice using RFID tracking and microbiota analysis.

This study evaluates how different laboratory methods affect microbiome metagenomic sequencing results through an interlaboratory comparison of 44 labs analyzing shared reference samples.

This study compares the gut microbiome of Bengali and indigenous ethnicities in Bangladesh, finding distinct microbial profiles and phylosymbiotic links with Indian groups.

This study shows that the gut bacterium Blautia helps maintain colonic mucus function under low fiber diets by producing short-chain fatty acids that activate Ffar2.

This study performs a meta-analysis of URT microbiome data to identify consistent taxonomic associations with health and disease across multiple respiratory conditions.

This study investigates epithelial responses to commensal and pathogenic bacteria using intestinal models, showing differences in immune activation between cell lines and organoids.

This study identifies gut-associated microbes in pig nasal cavities, showing their presence and activity through microbiota analysis and cDNA examination.

This study isolates and analyzes peptidoglycan from fecal samples of mice and humans to explore its role in host-microbiome interactions and health.

This study uses a gnotobiotic mouse model to show that intergenerational microbiota colonization during early life affects growth and immunity under undernutrition conditions.

The paper applies dimension reduction methods to microbiome data and links Bifidobacterium to allergic rhinitis risk and nutrient intake.

The paper develops a minimal model to explain how hosts optimize antimicrobial defense at the intestinal mucus interface by integrating signals from bulk microbiota and segmented filamentous bacteria.

The paper develops a metagenomics pipeline to study insertion sequence (IS) elements in the microbiota, revealing their role in bacterial genome diversification and adaptation.

This study identifies gene modules from host-microbiome co-expression networks in marmoset intestines, revealing spatially varying interactions and new bacterial genes mediating host-microbiome relationships.

The paper shows that sterilized soil intake reduces asthma inflammation in mice by altering gut microbiota and shifting immune responses toward Th1.

This study examines gut microbiota profiles in CDKL5 deficiency disorder patients to identify correlations with clinical severity markers.

This study examines how urbanization affects small mammal communities and their gut microbiota, finding that urban species show reduced taxonomic diversity but increased functional diversity in their microbiota.

This paper examines how C. rodentium {phi}stx2dact infection and antibiotic treatment affect fecal microbiota in mice, finding that antibiotics causing rapid infection clearance have the most detrimental impact on microbiota diversity.

This paper introduces MintTea, a method for integrating multi-omic microbiome data to identify disease-associated modules, demonstrating its effectiveness across multiple datasets.

This study identifies dietary simple carbohydrates as critical for Klebsiella pneumoniae colonization and shows dietary fiber's role in preventing its dissemination during colitis.

This study compares the effects of semi-synthetic and grain-based diets on breeding outcomes and metabolic health in adult C57BL/6J mice, finding diet type influences body composition, fecal microbiota, and reproductive success.

This study investigates how angiotensin II affects the gut microbiome in mice, finding its impact is smaller than factors like diet and facility.

The paper investigates the role of Prevotella copri in mediating the metabolic effects of a therapeutic food for malnutrition using gnotobiotic mouse models and multi-omics analyses.

The paper predicts colonization outcomes of exogenous microbes in complex communities using a data-driven approach, validated with synthetic data and experimental tests.

This study examines how diet and sterilization affect gut microbiome diversity and acute seizure incidence in TMEV-infected mice, finding diet impacts seizure frequency and behavioral outcomes.

The paper identifies an Enterobacteriaceae bloom in aging animals as a common feature, showing its link to immune decline and susceptibility to infection, while highlighting the role of commensal competition in healthy aging.

This study tracks microbiome changes across four body sites in 86 participants over six years, revealing site-specific stability, individualized dynamics, and altered patterns in insulin-resistant individuals.

This study examines the metabolic capacities of gut commensal bacteria toward prebiotic carbohydrates, revealing strain-specific effects on metabolite production and gene expression.

This study shows the gut microbiome enhances metabolite cycling in Drosophila, interacting with the circadian clock and diet, with high-protein diets increasing cycling and high-sugar diets suppressing it.