AnDi-J: diffusion analysis of single-particle tracking data in Fiji
AnDi-J is a Fiji plugin that analyzes single-particle tracking data using classical and machine learning methods to extract diffusion properties and classify trajectories.
Topic · Modeling and Simulation · Mathematics
OpenAlex topic; a paper is listed when OpenAlex scores it at least 0.5 for this topic.
7 papers
AnDi-J is a Fiji plugin that analyzes single-particle tracking data using classical and machine learning methods to extract diffusion properties and classify trajectories.
Alisha Budhathoki, Ganesh Pandey, Jonah Galeota-Sprung, Jan-Hendrik Spille
The paper evaluates analysis methods for extracting diffusion parameters from single-molecule trajectories and shows that single-track analysis outperforms bulk methods.
Conrad Möckel, Abin Biswas, Christine Schweitzer…·Jochen R. Guck
This study uses differential dynamic microscopy to analyze cytoplasmic dynamics in Xenopus laevis egg extracts and HeLa cells, revealing subdiffusive motion and cytoskeletal influences on fluidity.
Arsalan Rahimabadi, Habib Benali
The paper generalizes diffusion and Fisher-KPP equations on networks to model neurodegenerative progression, accounting for anomalous diffusion in brain structures.
The paper studies how cross-linkers generate chromatin phase separated nanoregions and quantifies their impact on molecular access using single particle trajectories.