Author

B. Usadel

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Plant Biology· 7

Signature Assays, Organisms & Methods

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Organism:plant (other)· 6 Assay:bulk RNA-seq· 4 Approach:experimental assay· 4 Approach:statistical model· 3 Research Focus:cell type annotation· 2 Approach:deep learning· 2 Research Focus:differential expression· 2 Research Focus:gene regulatory network inference· 2

Frequent Co-Authors

A. Hallab· 3 shared A. R. Fernie· 2 shared M. Schmidt· 2 shared A. Bolger· 1 shared A. Hadizadeh Esfahani· 1 shared A. Kam· 1 shared A. Kozlo· 1 shared A. Kranz· 1 shared

Activity by Year

2018-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 16 mutual co-author links

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3 shared papersPlant Biology

A. Hallab

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Author profile →

7 papers

Recent·Most cited

DataPLAN: a web-based data management plan generator for the plant sciences

X.-R. Zhou, S. Beier, D. Brilhaus, C. M. Rodrigues, T. Mühlhaus, D. von Suchodoletz, R. M. Twyman, B. Usadel, A. Kranz

DataPLAN is a web-based tool that generates standardized data management plans for plant science research projects, reducing the workload of creating and maintaining these plans.

bioRxiv · Jul 7, 2023Plant Biology

Genomic, transcriptomic, and metabolomic analysis of Traditional Chinese Medicine plant Oldenlandia corymbosa reveals the biosynthesis and mode of action of anti-cancer metabolites

I. Julca, D. Mutwil-Anderwald, V. Manoj, Z. Khan, S. K. Lai, L. K. Yang, I. T. Beh, J. Dziekan, Y. P. Lim, S. K. Lim, Y. W. Low, Y. I. Lam, Y. Mu, Q. W. Tan, P. Nuc, , M. Mutwil

This study identifies ursolic acid as the main anti-cancer compound in Oldenlandia corymbosa and reveals its mode of action through genomic, transcriptomic, and metabolomic analysis.

bioRxiv · Jun 14, 2022 · PreprintPlant Biology

A gap-free tomato genome built from complementary PacBio and Nanopore long DNA sequences reveals extensive linkage drag during breeding

W. M. J. van Rengs, M. H.- W. Schmidt, S. Effgen, Y. Wang, M. W. A. M. Zaidan, B. Huettel, H. J. Schouten, B. Usadel, C. J. Underwood

The paper uses long-read sequencing to assemble a complete tomato genome, revealing linkage drag from a wild species during breeding.

bioRxiv · Aug 30, 2021Plant Biology

Plant PhysioSpace: a robust tool to compare stress response across plant species

A. Hadizadeh Esfahani, J. Mass, A. Hallab, B. M. Schuldt, B. Usadel, M.-C. Ott, B. Buer, A. Schuppert

Plant PhysioSpace compares stress responses across plant species by mapping new data to precomputed physiology-specific patterns from a reference compendium.

bioRxiv · Nov 16, 2020Plant Biology

Seed hemicelluloses tailor mucilage properties and salt tolerance

B. Yang, F. Hofmann, B. Usadel, C. Voiniciuc

This study investigates the role of hemicelluloses in seed mucilage properties and salt tolerance by analyzing mutants in Arabidopsis.

bioRxiv · Aug 3, 2020Plant Biology

Cell type specific transcriptional reprogramming of maize leaves during Ustilago maydis induced tumor formation

M. Villajuana-Bonequi, A. Matei, C. Ernst, A. Hallab, B. Usadel, G. Doehlemann

The paper identifies cell-type specific transcriptional changes in maize leaves during Ustilago maydis infection, revealing gene expression patterns associated with hypertrophy and hyperplasia in mesophyll and bundle sheath cells.

bioRxiv · Feb 17, 2019Plant Biology

The genome and metabolome of the tobacco tree, Nicotiana glauca: a potential renewable feedstock for the bioeconomy

B. Usadel, T. Tohge, F. Scossa, N. Sierro, M. Schmidt, A. Vogel, A. Bolger, A. Kozlo, E. M. Enfissi, K. Morreel, M. Regenauer, A. Hallab, C. Ruprecht, H. Gundlach, M. Spannagl, , A. R. Fernie

The paper presents the draft genome and transcriptome of Nicotiana glauca, along with metabolome analysis, providing a resource for studying secondary metabolites and phylogenetics in tobacco species.

bioRxiv · Jun 20, 2018 · PreprintPlant Biology