Author

D. Borek

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Biophysics· 4

Signature Assays, Organisms & Methods

Click to filter · or open tag

Assay:cryo-EM· 4 Approach:statistical model· 2 Research Focus:benchmarking· 1 Approach:deep learning· 1 Organism:E. coli· 1 Approach:experimental assay· 1 Approach:microscopy & imaging analysis· 1 Research Focus:protein folding & dynamics· 1

Frequent Co-Authors

Y. Guo· 4 shared Z. Otwinowski· 4 shared R. Bromberg· 3 shared T. Emde· 2 shared A. Savchenko· 1 shared D. A. Plymire· 1 shared E. Karimullina· 1 shared M. Puzio· 1 shared

Activity by Year

2019-2022 · peak 2/yr

Co-Author Collaboration Network

8 top collaborators · 22 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

4 shared papersBiophysics

Y. Guo

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Monomer and dimer structures of cytochrome bo3 ubiquinol oxidase from Escherichia coli

Y. Guo, E. Karimullina, T. Emde, Z. Otwinowski, D. Borek, A. Savchenko

This study determines the monomeric and dimeric structures of E. coli cytochrome bo3 ubiquinol oxidase using cryo-EM, revealing dimerization through subunit interactions without major structural changes.

bioRxiv · Dec 9, 2022 · PreprintBiophysics

CryoEM single particle reconstruction with a complex-valued particle stack

R. Bromberg, Y. Guo, D. Borek, Z. Otwinowski

This paper introduces a complex-valued particle stack for cryoEM single particle reconstruction to improve data processing efficiency and resolution.

bioRxiv · Jul 28, 2022Biophysics

The His-tag as a decoy modulating preferred orientation in cryoEM

R. Bromberg, Y. Guo, D. A. Plymire, T. Emde, M. Puzio, D. Borek, Z. Otwinowski

The paper shows that His-tags affect particle orientation in cryoEM by modulating interactions with the water-air interface, suggesting their use for controlling preferred orientation patterns.

bioRxiv · Sep 22, 2020Biophysics

High-resolution cryo-EM reconstructions in the presence of substantial aberrations

R. Bromberg, Y. Guo, D. Borek, Z. Otwinowski

This study analyzes how uncorrected optical aberrations affect cryo-EM single particle reconstruction and provides a method to assess information loss.

bioRxiv · Oct 8, 2019Biophysics