Author
Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.
5 papers
Recent·Most cited
D. del Alamo, J. R. Jeliazkov, D. Truan, J. Karpiak
This paper shows that ESMFold can predict alternate protein conformations and generate interconversion paths between them using sequence embeddings from ESM2.
D. del Alamo, L. DeSousa, R. M. Nair…·H. Mchaourab
This paper investigates the conformational dynamics of the pH-dependent APC antiporter GadC using DEER spectroscopy and AlphaFold2 models, revealing acid-induced structural changes and substrate-specific dynamics.
D. Sala, D. del Alamo, H. S. Mchaourab, J. Meiler
This paper introduces ConfChangeMover (CCM), a Rosetta tool for modeling protein conformational changes using sparse experimental data, and shows it outperforms existing methods.
D. del Alamo, D. Sala, H. Mchaourab, J. Meiler
This study uses AlphaFold2 to generate multiple conformations of transporters and GPCRs, showing that reducing MSA depth improves conformational sampling accuracy.
D. del Alamo, M. Tessmer, R. A. Stein…·J. Meiler
This paper introduces RosettaDEER, a method that simulates DEER distance distributions and decay traces to improve protein fold prediction using sparse experimental data.