Author

D. M. Stoebel

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 3

Signature Assays, Organisms & Methods

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Organism:E. coli· 3 Assay:bulk RNA-seq· 2 Research Focus:differential expression· 2 Approach:statistical model· 2 Assay:DNA methylation· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

J. Hardin· 2 shared S. M. Beeler· 2 shared A. J. Lee Fong· 1 shared A. N. Schep· 1 shared C. Evans· 1 shared C. J. Becker· 1 shared C. R. Doering· 1 shared E. Ashby· 1 shared

Activity by Year

2017-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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2 shared papersMicrobiology

J. Hardin

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3 papers

Recent·Most cited

MicrobiologybioRxivFeb 17, 2023

The timing of transcription of RpoS-dependent genes varies across multiple stresses in Escherichia coli K-12

J. Adams, J. Hoang, E. Petroni…·D. M. Stoebel

This study examines how RpoS-dependent gene transcription timing varies across different stresses in E. coli, showing distinct patterns for stationary phase, high osmolarity, and cold shock.

DOI 10.1128/msystems.00663-23

E. colibulk RNA-seq

𝕏 PostBluesky

MicrobiologybioRxivPreprintOct 8, 2019

The transcriptional response of genes to RpoS concentration in Escherichia coli is not determined by core promoter sequences

S. M. Beeler, C. R. Doering, S. Tran, D. M. Stoebel

The paper investigates whether RpoS binding site sequences determine gene sensitivity to RpoS concentration in E. coli and finds they do not.

DOI 10.1101/796656

E. coliDNA methylation

𝕏 PostBluesky

MicrobiologybioRxivJan 11, 2017

The genome-wide transcriptional response to varying RpoS levels in Escherichia coli K-12

G. T. Wong, R. P. Bonocora, A. N. Schep…·D. M. Stoebel

This study examines how varying RpoS levels affect the transcriptome of E. coli during stationary phase, identifying gene regulation patterns and promoter sensitivity mechanisms.

DOI 10.1128/jb.00755-16

E. colibulk RNA-seq

𝕏 PostBluesky