Author

F. Kuipers

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 2 Biochemistry· 1 Pathology· 1

Signature Assays, Organisms & Methods

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Organism:human· 3 Approach:experimental assay· 2 Assay:metagenomics· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

A. Zhernakova· 2 shared J. Fu· 2 shared M. Koehorst· 2 shared S. Andreu-Sanchez· 2 shared V. W. Bloks· 2 shared A. Barcaru· 1 shared A. de Bruin· 1 shared A. Gerding· 1 shared

Activity by Year

2020-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 22 mutual co-author links

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Curved chords = mutual co-authorship

2 shared papersMicrobiology

A. Zhernakova

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Mother-Infant Gut Viruses and their Bacterial Hosts: Transmission Patterns and Dynamics during Pregnancy and Early Life

S. Garmaeva, T. Sinha, A. Gulyaeva, N. Kuzub, J. E. Spreckels, S. Andreu-Sanchez, R. Gacesa, A. Vich Vila, S. Brushett, M. Kruk, J. Dekens, J. Sikkema, F. Kuipers, A. Shkoporov, C. Hill, , A. Zhernakova

bioRxiv · Aug 21, 2023Microbiology

Gut microbial structural variations as determinants of human bile acid metabolism

D. Wang, M. Doestzada, L. Chen, S. Andreu-Sanchez, I. C. L. van den Munckhof, H. Augustijn, M. Koehorst, V. W. Bloks, N. P. Riksen, J. H. W. Rutten, M. G. Netea, A. Zhernakova, F. Kuipers, J. Fu

The paper identifies bacterial structural variants associated with bile acid metabolism in humans using metagenomic data from two Dutch cohorts.

bioRxiv · Feb 28, 2021 · PreprintMicrobiology

Dynamic binning peak detection and assessment of various lipidomics liquid chromatography-mass spectrometry pre-processing platforms

X. Feng, W. Zhang, F. Kuipers, I. Kema, A. Barcaru, P. Horvatovich

The paper develops a dynamic binning method for improved peak detection in lipidomics LC-MS data and compares pre-processing tools for differential compound detection.

bioRxiv · Oct 10, 2020Biochemistry

Spontaneous liver disease in wild-type C57BL/6JOlaHsd mice fed semisynthetic diet

O. A. H. O. Ronda, B. J. M. van de Heijning, A. de Bruin, R. E. Thomas, I. Martini, M. Koehorst, A. Gerding, M. H. Koster, V. W. Bloks, A. Jurdzinski, N. L. Mulder, R. Havinga, E. M. van der Beek, D.-J. Reijngoud, F. Kuipers, H. J. Verkade

This study identifies a spontaneous liver disease in C57BL/6JOlaHsd mice fed a semisynthetic diet, characterized by bimodal liver weight distribution and metabolic abnormalities.

bioRxiv · Apr 8, 2020Pathology