Author

G. A. Dotson

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Cancer Biology· 1 Cell Biology· 1 Microbiology· 1 Scientific Communication & Education· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Research Focus:benchmarking· 2 Research Focus:database / resource· 2 Approach:deep learning· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Research Focus:chromatin & epigenetic regulation· 1

Frequent Co-Authors

I. Rajapakse· 2 shared K. L. Sovacool· 2 shared A. C. Drotos· 1 shared A. Kriebel· 1 shared A. Rehemtulla· 1 shared A. Woloshin· 1 shared B. N. Wolford· 1 shared C. Stansbury· 1 shared

Activity by Year

2020-2022 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 19 mutual co-author links

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2 shared papersCell Biology

I. Rajapakse

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Author profile →

4 papers

Recent·Most cited

A lipid-associated macrophage lineage rewires the spatial landscape of adipose tissue in early obesity

C. Stansbury, G. A. Dotson, H. Pugh, A. Rehemtulla, I. Rajapakse, L. A. Muir

This paper identifies a novel lipid-associated macrophage (LAM) phenotype in early obesity that contributes to crown-like structure formation through specific ligand-receptor interactions.

bioRxiv · Feb 26, 2022Cell Biology

OptiFit: an improved method for fitting amplicon sequences to existing OTUs

K. L. Sovacool, S. L. Westcott, M. B. Mumphrey, G. A. Dotson, P. D. Schloss

OptiFit improves OTU assignment by considering all reference-query sequence pairs, achieving quality similar to de novo methods while maintaining consistency across datasets.

bioRxiv · Nov 9, 2021Microbiology

Teaching Python for Data Science: Collaborative development of a modular & interactive curriculum

M. Duda, K. L. Sovacool, N. Farzaneh, V. K. Nguyen, S. E. Haynes, H. Falk, K. L. Furman, L. A. Walker, R. Diao, M. Oneka, A. C. Drotos, A. Woloshin, G. A. Dotson, A. Kriebel, L. Meng, , B. N. Wolford

The paper describes the development of an open-source, modular Python data science curriculum for high school women using Jupyter notebooks and collaborative practices.

bioRxiv · Jun 17, 2021Scientific Communication & Education

TCF7L2 Silencing Reprograms the 4D Nucleome of Colorectal Cancer Cells

M. A. Brown, G. A. Dotson, S. Ronquist, G. Emons, I. Rajapakse, T. Ried

This study shows that TCF4 silencing alters chromatin structure and gene expression in colorectal cancer cells, identifying EMT and E2F pathways as deregulated and c-JUN as a key transcription factor.

bioRxiv · May 12, 2020 · PreprintCancer Biology