MicrobiologybioRxiv
A novel multi SNP based method for the identification of subspecies and associated lineages and sub-lineages of the Mycobacterium tuberculosis complex by whole genome sequencing
S. I. W. Lipworth, R. Jajou, H. de Neeling…·D. van Soolingen
This paper introduces SNP-IT, a method using whole genome sequencing to identify subspecies and lineages of Mycobacterium tuberculosis complex, revealing high prevalence of M. orygis in UK clinical isolates.
DOI 10.3201/eid2503.180894