Author

J. Cahn

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Plant Biology· 5

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:chromatin & epigenetic regulation· 4 Approach:experimental assay· 4 Organism:Arabidopsis· 2 Assay:bulk RNA-seq· 2 Research Focus:cell type annotation· 2 Assay:ChIP-seq· 2 Approach:statistical model· 2 Organism:zebrafish· 2

Frequent Co-Authors

R. Lister· 3 shared C. de Santis Alves· 2 shared E. Ernst· 2 shared H. Millar· 2 shared J. Lynn· 2 shared J. Petereit· 2 shared O. Duncan· 2 shared R. A. Martienssen· 2 shared

Activity by Year

2020-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

3 shared papersPlant Biology

R. Lister

Mutual co-authors in cluster

Author profile →

5 papers

Recent·Most cited

MaizeCODE reveals bi-directionally expressed enhancers that harbor molecular signatures of maize domestication.

J. Cahn, M. Regulski, J. Lynn, E. Ernst, C. de Santis Alves, S. Ramakrishnan, K. Chougule, S. Wei, Z. Lu, X. Xu, J. Drenkow, M. Kramer, A. Seetharam, M. B. Hufford, W. R. McCombie, , R. A. Martienssen

The paper identifies bi-directionally expressed enhancers in maize with domestication signatures using integrated epigenomic and transcriptomic data from multiple tissues and inbred lines.

bioRxiv · Feb 22, 2024Plant Biology

Characterization of DNA methylation reader proteins of Arabidopsis thaliana

J. Cahn, J. P. B. Lloyd, I. D. Karemaker, P. W. Jansen, J. Pflueger, O. Duncan, J. Petereit, O. Bogdanovic, H. Millar, M. Vermeulen, R. Lister

The paper identifies and characterizes DNA methylation reader proteins in Arabidopsis thaliana, revealing context-specific binding preferences and functional roles.

bioRxiv · Dec 5, 2023Plant Biology

Teosinte Pollen Drive guides maize diversification and domestication by RNAi

B. Berube, E. Ernst, J. Cahn, B. Roche, C. de Santis Alves, J. Lynn, A. Scheben, A. Siepel, J. Ross-Ibarra, J. Kermicle, R. A. Martienssen

The paper identifies Teosinte Pollen Drive, an RNAi-based gene drive in maize-teosinte hybrids, and shows its role in maize domestication and diversification through linked genetic elements.

bioRxiv · Jul 12, 2023Plant Biology

Systematic evaluation of chromatin immunoprecipitation sequencing to study histone occupancy in dormancy transitions of grapevine buds

D. Hermawaty, T. G. Chabikwa, J. Cahn, R. Lister, M. J. Considine

The paper develops and optimizes a ChIP-seq protocol for studying histone occupancy in dormant grapevine buds, demonstrating its effectiveness for woody tissues.

bioRxiv · Mar 14, 2022Plant Biology

Coordination and assembly of protein complexes encoded across mitochondrial and nuclear genomes is assisted by CLPP2 in Arabidopsis thaliana

J. Petereit, O. Duncan, M. Murcha, R. Fenske, E. Cincu, J. Cahn, A. Pruzinska, L. Kollipara, S. Wortekamp, A. Sickmann, J. Lee, R. Lister, H. Millar, S. HUANG

The paper shows that CLPP2 in Arabidopsis thaliana aids in coordinating and assembling protein complexes encoded by both mitochondrial and nuclear genomes, affecting mitochondrial protein homeostasis.

bioRxiv · Jan 22, 2020Plant Biology