Author

J. Nainys

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Cancer Biology· 1 Immunology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Research Focus:cell-cell communication· 2 Organism:human· 2 Assay:scRNA-seq· 2 Approach:Bayesian inference· 1 Assay:CITE-seq· 1 Research Focus:clustering· 1 Approach:deep learning· 1

Frequent Co-Authors

L. Mazutis· 2 shared A. E. Cornish· 1 shared A. J. Carr· 1 shared A. Ulys· 1 shared A. Y. Rudensky· 1 shared C. Konopacki· 1 shared D. Pe'er· 1 shared E. Azizi· 1 shared

Activity by Year

2018-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 31 mutual co-author links

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2 shared papersCancer Biology

L. Mazutis

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

Single-cell transcriptional profiling of clear cell renal cell carcinoma reveals an invasive tumor vasculature phenotype

J. Zvirblyte, J. Nainys, S. Juzenas, R. Kubiliute, M. Kincius, A. Ulys, S. Jarmalaite, L. Mazutis

This study uses single-cell RNA sequencing to analyze ccRCC tumor microenvironment, identifying an invasive vasculature subpopulation linked to poor survival.

bioRxiv · Aug 9, 2023Cancer Biology

Single-cell Map of Diverse Immune Phenotypes Driven by the Tumor Microenvironment

E. Azizi, A. J. Carr, G. Plitas, A. E. Cornish, C. Konopacki, S. Prabhakaran, J. Nainys, K. Wu, V. Kiseliovas, M. Setty, K. Choi, R. M. Fromme, P. Dao, P. T. McKenney, R. C. Wasti, , D. Pe'er

The paper maps immune cell phenotypes in breast cancer using single-cell RNA-seq and identifies continuous tumor-specific expansions driven by environmental cues.

bioRxiv · Apr 2, 2018Immunology