Author

J. Pugin

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Cell Biology· 1 Immunology· 1 Pathology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:cell type annotation· 3 Research Focus:differential expression· 3 Organism:human· 3 Assay:bulk RNA-seq· 2 Approach:experimental assay· 2 Assay:scRNA-seq· 2 Research Focus:gene regulatory network inference· 1 Research Focus:host-pathogen & immune response· 1

Frequent Co-Authors

A. Faivre· 2 shared A. P. McMahon· 2 shared D. Legouis· 2 shared K. Koppitch· 2 shared M. Naesens· 2 shared S. de Seigneux· 2 shared A. Cerny· 1 shared A. Hertig· 1 shared

Activity by Year

2019-2021 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 28 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersPathology

A. Faivre

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Excessive inflammatory and metabolic responses to acute SARS-CoV-2 infection are associated with a distinct gut microbiota composition

W. C. Albrich, T. S. Ghosh, S. Ahearn-Ford, F. Mikaeloff, N. Lunjani, B. Forde, N. Suh, G.-R. Kleger, U. Pietsch, M. Frischknecht, C. Garzoni, R. Forlenza, M. Horgan, C. Sadlier, T. R. Negro, , L. O'Mahony

This study identifies distinct gut microbiota compositions and metabolic/cytokine profiles associated with severe outcomes in SARS-CoV-2 infection.

bioRxiv · Oct 26, 2021 · PreprintImmunology

Single-cell profiling in COVID-19 associated acute kidney injury reveals patterns of tubule injury and repair in human

D. Legouis, A. Rinaldi, G. Arnoux, T. Verissimo, J. Scotti-Gerber, A. Faivre, M. Schibler, A. Rinaldi, M. Naesens, K. Koppitch, J. Pugin, A. P. McMahon, S. Moll, S. de Seigneux, P. E. Cippa

This study uses single-nucleus RNA sequencing to analyze kidney tubule injury and repair in COVID-19 patients, identifying cell state transitions and reparative mechanisms.

bioRxiv · Oct 5, 2021Pathology

Impaired renal gluconeogenesis is a major determinant of acute kidney injury associated mortality

D. Legouis, S.-E. Ricksten, A. Faivre, K. Gariani, P. Galichon, L. Berchtold, E. Feraille, K. Koppitch, A. Hertig, P.-Y. Martin, M. Naesens, J. Pugin, A. P. McMahon, P. E. Cippà, S. de Seigneux

This study shows impaired renal gluconeogenesis during AKI contributes to systemic metabolic disturbances and mortality, with thiamine supplementation reducing mortality in critically ill patients.

bioRxiv · Oct 16, 2019Cell Biology