J. R. Nery

The paper presents a time-resolved single-cell and spatial gene regulatory atlas of Arabidopsis thaliana infected by bacterial pathogens, revealing immune responses and gene regulatory logic.

The paper creates a single-nucleus transcriptome atlas of Arabidopsis seed-to-seed development using over 800,000 nuclei across ten stages, revealing transcriptional conservation and heterogeneity in cell types.

This study shows that drought recovery in plants rapidly activates immune responses, enhancing pathogen resistance across multiple tomato species.

The paper compares transcriptional responses in Arabidopsis to different water potential reduction methods and introduces a high-throughput hard agar assay.

The paper creates a single nucleus multi-omics atlas of the murine pituitary, revealing cell type-specific regulatory mechanisms and identifying a cis-regulatory region linked to fertility.

The paper develops an integrated multi-omic framework to study the plant response to jasmonic acid, identifying new regulatory components and crosstalk points with other signaling pathways.

This study characterizes the structural complexity and epigenomic impact of T-DNA insertions in Arabidopsis using long-read sequencing technologies.