Author

J. Rodriguez-Ramos

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 3

Signature Assays, Organisms & Methods

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Assay:metagenomics· 3 Research Focus:database / resource· 2 Organism:human· 2 Approach:statistical model· 2 Research Focus:cell type annotation· 1 Approach:deep learning· 1 Research Focus:gene regulatory network inference· 1 Approach:genetic perturbation / CRISPR· 1

Frequent Co-Authors

M. Shaffer· 3 shared R. A. Daly· 3 shared K. C. Wrighton· 2 shared L. M. Solden· 2 shared M. A. Borton· 2 shared A. A. Zayed· 1 shared A. B. Narrowe· 1 shared A. Sabag-Daigle· 1 shared

Activity by Year

2020-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 41 mutual co-author links

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3 shared papersMicrobiology

M. Shaffer

Mutual co-authors in cluster

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3 papers

Recent·Most cited

MicrobiologybioRxivJan 19, 2023

Human-gut phages harbor sporulation genes

D. Schwartz, J. Rodriguez-Ramos, M. Shaffer…·J. T. Lennon

The paper identifies sporulation genes in human gut phages that may influence bacterial spore formation and host microbiome health.

DOI 10.1128/mbio.00182-23

humanmetagenomics

𝕏 PostBluesky

MicrobiologybioRxivPreprintOct 24, 2022

Exposing New Taxonomic Variation with Inflammation-A Murine Model-Specific Genome Database for Gut Microbiome Researchers

I. Leleiwi, J. Rodriguez-Ramos, M. Shaffer…·K. C. Wrighton

The paper presents a genomic catalog of the CBA/J murine gut microbiome, revealing taxonomic and functional changes during Salmonella-induced inflammation.

DOI 10.1101/2022.10.24.513540

mousemetagenomics

𝕏 PostBluesky

MicrobiologyNucleic Acids ResearchPeer-reviewedAug 7, 2020

DRAM for distilling microbial metabolism to automate the curation of microbiome function

M. Shaffer, M. A. Borton, B. B. McGivern…·K. C. Wrighton

DRAM automates microbiome function curation by translating genomic data into microbial traits, accurately assigning metabolic roles in soil and gut communities.

DOI 10.1093/nar/gkaa621

humanmultiple species

𝕏 PostBluesky