Author

J. Stuart

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Cancer Biology· 2 Cell Biology· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Organism:human· 3 Assay:bulk RNA-seq· 2 Research Focus:cell type annotation· 2 Research Focus:drug response / drug discovery· 2 Approach:experimental assay· 2 Research Focus:clustering· 1 Research Focus:database / resource· 1 Approach:deep learning· 1

Frequent Co-Authors

A. Buchanan· 1 shared A. Struck· 1 shared B. Walsh· 1 shared C. F. Costa· 1 shared C. Metcalfe· 1 shared H. Holland-Moritz· 1 shared I. Miranda-Santos· 1 shared J. A. Lee· 1 shared

Activity by Year

2017-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 12 mutual co-author links

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1 shared paperCancer Biology

A. Buchanan

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Transformer-based modeling of Clonal Selection and Expression Dynamics (TraCSED) reveals resistance signatures in breast cancer

N. Maulding, J. Zou, W. Zhou, C. Metcalfe, J. Stuart, X. Ye, M. Hafner

TraCSED identifies resistance pathways in breast cancer by analyzing scRNA-seq data and clonal selection dynamics over time.

bioRxiv · Jun 15, 2024 · PreprintCancer Biology

Mitochondrial and metabolic remodeling in human skin fibroblasts in response to glucose availability

C. F. Costa, S. A. Pinho, S. L. C. Pinho, I. Miranda-Santos, O. Bagshaw, J. Stuart, P. J. Oliveira, T. Cunha-Oliveira

This study investigates how glucose availability affects mitochondrial and metabolic changes in human skin fibroblasts under different culture conditions.

bioRxiv · Feb 24, 2021 · PreprintCell Biology

Exploring Integrative Analysis using the BioMedical Evidence Graph

A. Struck, B. Walsh, A. Buchanan, J. A. Lee, R. Spangler, J. Stuart, K. Ellrott

The paper introduces the BioMedical Evidence Graph (BMEG), a graph database for integrative cancer biology analysis, demonstrating its utility through various queries and comparisons with other systems.

bioRxiv · Sep 25, 2019Cancer Biology

Novel bacterial lineages associated with boreal moss species

H. Holland-Moritz, J. Stuart, L. R. Lewis, S. Miller, M. C. Mack, S. F. McDaniel, N. Fierer

The paper identifies novel bacterial lineages in boreal mosses, showing host identity strongly influences community composition and revealing metabolic capabilities of understudied taxa.

bioRxiv · Nov 16, 2017Microbiology