Author

K. Pagel

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biophysics· 2 Immunology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Assay:bulk RNA-seq· 1 Approach:deep learning· 1 Research Focus:drug response / drug discovery· 1 Research Focus:host-pathogen & immune response· 1 Organism:human· 1 Research Focus:protein folding & dynamics· 1 Assay:proteomics· 1

Frequent Co-Authors

A. B. Riemer· 1 shared A. Mallagaray· 1 shared A. Omdahl· 1 shared A. Raveh· 1 shared B. Kaminow· 1 shared C. Tokheim· 1 shared C. Uetrecht· 1 shared D. HIrsch· 1 shared

Activity by Year

2019-2021 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 14 mutual co-author links

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1 shared paperImmunology

A. B. Riemer

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3 papers

Recent·Most cited

Inulin nanostructures: The sweet-spot of carbohydrate self-assembly

Z. A. Arnon, M. Grabarics, T. Kreiser, A. Raveh, K. Pagel, E. Gazit

This study identifies the optimal length for inulin oligosaccharides to form discrete spheres through self-assembly, suggesting carbohydrates could be used for novel self-assembling materials.

bioRxiv · Jul 13, 2021 · PreprintBiophysics

Protein secondary structure affects glycan clustering in native mass spectrometry

H. Yan, J. Lockhauserbäumer, G. P. Szekeres, A. Mallagaray, R. Creutznacher, S. Taube, T. Peters, K. Pagel, C. Uetrecht

The paper investigates how protein secondary structure affects glycan clustering in native mass spectrometry, finding that β-sheet content strongly influences clustering behavior.

bioRxiv · May 1, 2021Biophysics

High-throughput prediction of MHC Class I and Class II neoantigens with MHCnuggets

X. M. Shao, R. Bhattacharya, J. Huang, I. K. A. Sivakumar, C. Tokheim, L. Zheng, D. HIrsch, B. Kaminow, A. Omdahl, M. Bonsack, A. B. Riemer, V. Velculescu, V. Anagnostou, K. Pagel, R. Karchin

The paper introduces MHCnuggets, a deep learning method for predicting MHC class I and II neoantigen binding, showing improved performance and scalability across 26 cancer types.

bioRxiv · Oct 4, 2019Immunology