Author
Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.
4 papers
Recent·Most cited
A. Balan, Y. Elhanati, K. E. Meza Landeros…·R. Karchin
CRAFT, a transformer model, learns a generative grammar of healthy TCR repertoires to detect cancer-associated immune remodeling through structured deviations in sequence space.
T. Palmer, M. D. Kessler, X. M. Shao…·E. J. Fertig
SpliceMutr quantifies splicing-derived neoantigens across cancers, finding correlations with immune biomarkers and treatment response.
A. G. Dykema, J. Zhang, B. Zhang…·K. N. Smith
The paper identifies 10 subsets of lung cancer-infiltrating Tregs, showing one subset is suppressive and linked to anti-PD-1 resistance while another is Th1-like and associated with PD-1 response.
X. M. Shao, R. Bhattacharya, J. Huang…·R. Karchin
The paper introduces MHCnuggets, a deep learning method for predicting MHC class I and II neoantigen binding, showing improved performance and scalability across 26 cancer types.