Author

X. M. Shao

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Cancer Biology· 1 Immunology· 1 Pharmacology & Toxicology· 1

Signature Assays, Organisms & Methods

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Approach:deep learning· 2 Organism:human· 2 Assay:bulk RNA-seq· 1 Research Focus:cell signaling & trafficking· 1 Research Focus:development & morphogenesis· 1 Research Focus:drug response / drug discovery· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

R. Karchin· 2 shared V. Anagnostou· 2 shared A. B. Riemer· 1 shared A. Balan· 1 shared A. Omdahl· 1 shared A. Saeed· 1 shared A. V. Favorov· 1 shared B. Kaminow· 1 shared

Activity by Year

2017-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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2 shared papersCancer Biology

R. Karchin

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Author profile →

3 papers

Recent·Most cited

Cancer BiologybioRxivMay 26, 2023

SpliceMutr enables pan-cancer analysis of splicing-derived neoantigen burden in tumors

T. Palmer, M. D. Kessler, X. M. Shao…·E. J. Fertig

SpliceMutr quantifies splicing-derived neoantigens across cancers, finding correlations with immune biomarkers and treatment response.

DOI 10.1158/2767-9764.crc-23-0309

humanwhole-genome sequencing

𝕏 PostBluesky

ImmunologybioRxivOct 4, 2019

High-throughput prediction of MHC Class I and Class II neoantigens with MHCnuggets

X. M. Shao, R. Bhattacharya, J. Huang…·R. Karchin

The paper introduces MHCnuggets, a deep learning method for predicting MHC class I and II neoantigen binding, showing improved performance and scalability across 26 cancer types.

DOI 10.1158/2326-6066.cir-19-0464

humanbulk RNA-seq

𝕏 PostBluesky

Pharmacology & ToxicologybioRxivSep 27, 2017

Inhaled nicotine equivalent to cigarette smoking disrupts systemic and uterine hemodynamics and induces cardiac arrhythmia in pregnant rats

X. M. Shao, H. E. Lopez-Valdes, J. Liang, J. L. Feldman

This study shows that inhaled nicotine during pregnancy disrupts systemic and uterine hemodynamics and causes cardiac arrhythmia in rats, with effects blocked by a nicotinic receptor antagonist.

DOI 10.1038/s41598-017-17301-5

ratexperimental assay

𝕏 PostBluesky