Infectious disease phylodynamics with occurrence data
L. Featherstone, F. Di Giallonardo, E. C. Holmes, T. Vaughan, S. Duchene
The paper shows that incorporating occurrence data with birth-death models improves estimates of the basic reproductive number in phylodynamic analyses, while coalescent models are less affected by sampling biases but cannot use occurrence data.
bioRxiv · Sep 14, 2020Evolutionary Biology