Author

P. Willems

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 2 Plant Biology· 2 Bioengineering· 1 Cell Biology· 1

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Research Focus:cell type annotation· 6 Assay:proteomics· 5 Approach:experimental assay· 3 Approach:statistical model· 3 Organism:Arabidopsis· 2 Organism:bacteria (other)· 2 Approach:deep learning· 2 Research Focus:differential expression· 2

Frequent Co-Authors

K. Gevaert· 3 shared P. Van Damme· 3 shared F. Van Breusegem· 2 shared A. D. Fernandez-Fernandez· 1 shared A. Staes· 1 shared B. WEI· 1 shared C. McCrum· 1 shared C. Tian· 1 shared

Activity by Year

2019-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 13 mutual co-author links

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3 shared papersCell Biology

K. Gevaert

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Author profile →

6 papers

Recent·Most cited

Shift in vacuolar to cytosolic regime of infecting Salmonella from a dual proteome perspective

U. Fels, P. Willems, M. De Meyer, K. Gevaert, P. Van Damme

The paper uses dual proteome profiling to study Salmonella Typhimurium-host interactions, finding DIA proteomics better identifies downregulated bacterial proteins during early infection.

bioRxiv · Feb 7, 2023 · PreprintCell Biology

Mutation of Arabidopsis SME1 and Sm core assembly improves oxidative stress resilience

P. Willems, V. Van Ruyskensvelde, T. Maruta, R. Pottie, A. D. Fernandez-Fernandez, J. Pauwels, M. A. Hannah, K. Gevaert, F. Van Breusegem, K. Van Der Kelen

This study shows that mutating SME1 and Sm core assembly proteins in Arabidopsis enhances oxidative stress resilience by altering pre-mRNA splicing and activating a molecular stress response.

bioRxiv · Apr 12, 2022Plant Biology

The use of hybrid data-dependent and -independent acquisition spectral libraries empower dual-proteome profiling

P. Willems, U. A. Fels, A. Staes, K. Gevaert, P. Van Damme

This paper develops a hybrid spectral library approach combining data-dependent and in silico predicted data-independent acquisition proteomics to improve detection of host-pathogen proteomes during bacterial infections.

bioRxiv · May 24, 2020Microbiology

Identification of sulfenylated cysteines in Arabidopsis thaliana proteins using a disulfide-linked peptide reporter

B. WEI, P. Willems, J. Huang, C. Tian, Y. Jing, J. Messens, F. Van Breusegem

This study identifies sulfenylated cysteines in Arabidopsis thaliana using a transgenic Yap1 probe, revealing over 1,000 proteins with sulfenylated residues.

bioRxiv · Mar 25, 2020Plant Biology

Lost and found: re-searching and re-scoring proteomics data aids the discovery of bacterial proteins and improves proteome coverage

P. Willems, I. Fijalkowski, P. Van Damme

The paper improves proteome coverage and identifies unannotated bacterial proteins by re-analyzing proteomics data with enhanced search strategies and quality features.

bioRxiv · Dec 18, 2019Microbiology

Stability-normalised walking speed: a new approach for human gait perturbation research

C. McCrum, P. Willems, K. Karamanidis, K. Meijer

This paper introduces a method to normalize walking speed based on gait stability margins to reduce inter-individual variability in gait stability during perturbation studies.

bioRxiv · Feb 26, 2019Bioengineering