Author

D. Conde

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Plant Biology· 8 Evolutionary Biology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Organism:plant (other)· 8 Research Focus:cell type annotation· 6 Approach:statistical model· 5 Approach:experimental assay· 4 Research Focus:development & morphogenesis· 3 Research Focus:gene regulatory network inference· 3 Assay:scRNA-seq· 3 Assay:bulk RNA-seq· 2

Frequent Co-Authors

M. Kirst· 8 shared C. Dervinis· 7 shared H. W. Schmidt· 5 shared K. M. Balmant· 5 shared P. M. Triozzi· 5 shared W. J. Pereira· 5 shared J.-M. Ane· 4 shared S. A. Knaack· 4 shared

Activity by Year

2017-2023 · peak 4/yr

Co-Author Collaboration Network

10 top collaborators · 38 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

8 shared papersPlant Biology

M. Kirst

Mutual co-authors in cluster

Author profile →

9 papers

Recent·Most cited

The Single-Cell Transcriptome Program of Nodule Development Cellular Lineages in Medicago truncatula

W. J. Pereira, J. Boyd, D. Conde, P. M. Triozzi, K. M. Balmant, C. Dervinis, H. W. Schmidt, C. Boaventura-Novaes, S. Chakraborty, S. A. Knaack, Y. Gao, F. A. Feltus, S. Roy, J.-M. Ane, J. Frugoli, M. Kirst

The paper characterizes single-cell transcriptomes during Medicago truncatula nodule development, revealing dynamic changes in auxin and cytokinin signaling pathways across cell lineages.

bioRxiv · Jun 13, 2023 · PreprintPlant Biology

JGI Plant Gene Atlas: An updateable transcriptome resource to improve structural annotations and functional gene descriptions across the plant kingdom

A. Sreedasyam, C. Plott, M. S. Hossain, J. T. Lovell, J. Grimwood, J. W. Jenkins, C. Daum, K. Barry, J. Carlson, S. Shu, J. Phillips, M. Amirebrahimi, M. Zane, M. Wang, D. Goodstein, , E Cooper

The paper introduces the JGI Plant Gene Atlas, a resource that improves gene function annotations by analyzing transcript abundance across 18 species and 604 tissues, identifying 64,620 genes with unknown functions.

bioRxiv · Sep 30, 2022 · PreprintPlant Biology

Two shifts in evolutionary lability underlie independent gains and losses of root-nodule symbiosis in a single clade of plants

H. Kates, B. C. O'Meara, R. LaFrance, G. W. Stull, E. K. James, S. Liu, Q. Tan, T. Yi, J.-M. Ane, D. Conde, M. Kirst, D. E. Soltis, R. P. Guralnick, P. S. Soltis, R. A. Folk

The paper reconstructs the evolutionary history of root-nodule symbiosis in the nitrogen-fixing clade, identifying a two-step process involving shifts in evolutionary lability that explain multiple independent gains and losses of the trait.

bioRxiv · Jul 31, 2022 · PreprintEvolutionary Biology

Single-cell analysis resolves the genetic program of primary vascular system formation in hybrid poplar

D. Conde, P. M. Triozzi, W. J. Pereira, H. W. Schmidt, K. M. Balmant, S. A. Knaack, S. Roy, C. Dervinis, M. Kirst

The paper uses single-cell RNA-seq to map the genetic program of primary vascular development in hybrid poplar at single-cell resolution.

bioRxiv · Dec 28, 2021 · PreprintPlant Biology

Temporal change in chromatin accessibility predicts regulators of nodulation in Medicago truncatula

S. A. Knaack, D. Conde, S. Chakraborty, K. M. Balmant, T. B. Irving, L. Gontijo Silva Maia, P. M. Triozzi, C. Dervinis, W. J. Pereira, J. Maeda, H. W. Schmidt, J.-M. Ane, M. Kirst, S. Roy

The paper identifies regulators of legume-rhizobia symbiosis by analyzing temporal chromatin accessibility and gene expression in Medicago truncatula roots.

bioRxiv · Aug 7, 2021Plant Biology

Functional and comparative genomics reveals conserved noncoding sequences in the nitrogen-fixing clade

W. J. Pereira, S. A. Knaack, D. Conde, S. Chakraborty, R. A. Folk, P. M. Triozzi, K. M. Balmant, C. Dervinis, H. W. Schmidt, J.-M. Ane, S. Roy, M. Kirst

The paper identifies conserved noncoding sequences in nitrogen-fixing plants and shows their role in regulating genes involved in root nodule symbiosis.

bioRxiv · Jul 27, 2021Plant Biology

A robust method of nuclei isolation for single-cell RNA sequencing of solid tissues from the plant genus Populus

D. Conde, P. M. Triozzi, K. M. Balmant, A. L. Doty, M. Miranda, A. Boullosa, H. W. Schmidt, W. J. Pereira, C. Dervinis, M. Kirst

The paper presents a method to isolate nuclei from plant tissues for scRNA-seq, overcoming limitations of protoplast isolation in complex tissues.

bioRxiv · Feb 11, 2021Plant Biology

Cross-talk between active DNA demethylation, resetting of cellular metabolism and shoot apical growth in poplar bud break

D. Conde, M. Perales, A.-L. Le Gac, C. Dervinis, M. Kirst, S. Maury, P. Gonzalez-Melendi, I. Allona

The paper shows that DNA demethylation, triggered by chilling, regulates the transition from winter dormancy to shoot growth in poplar by affecting gene expression and metabolism.

bioRxiv · Apr 3, 2017Plant Biology

A DNA demethylase overexpression promotes early apical bud maturation in poplar through the biosynthesis and accumulation of flavonoids

D. Conde, A. Moreno-Cortes, C. Dervinis, J. M. Ramos-Sanchez, M. Kirst, M. Perales, P. Gonzalez-Melendi, I. Allona

This study shows that overexpressing a DNA demethylase gene accelerates apical bud maturation in poplar by promoting flavonoid biosynthesis under short-day and cold conditions.

bioRxiv · Mar 7, 2017Plant Biology