Author

H. W. Schmidt

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Plant Biology· 6

Signature Assays, Organisms & Methods

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Organism:plant (other)· 6 Research Focus:cell type annotation· 5 Assay:scRNA-seq· 3 Research Focus:chromatin & epigenetic regulation· 2 Approach:deep learning· 2 Approach:experimental assay· 2 Approach:statistical model· 2 Research Focus:trajectory inference· 2

Frequent Co-Authors

C. Dervinis· 6 shared K. M. Balmant· 6 shared M. Kirst· 6 shared W. J. Pereira· 6 shared D. Conde· 5 shared P. M. Triozzi· 5 shared J.-M. Ane· 4 shared S. A. Knaack· 4 shared

Activity by Year

2021-2023 · peak 5/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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6 shared papersPlant Biology

C. Dervinis

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6 papers

Recent·Most cited

The Single-Cell Transcriptome Program of Nodule Development Cellular Lineages in Medicago truncatula

W. J. Pereira, J. Boyd, D. Conde, P. M. Triozzi, K. M. Balmant, C. Dervinis, H. W. Schmidt, C. Boaventura-Novaes, S. Chakraborty, S. A. Knaack, Y. Gao, F. A. Feltus, S. Roy, J.-M. Ane, J. Frugoli, M. Kirst

The paper characterizes single-cell transcriptomes during Medicago truncatula nodule development, revealing dynamic changes in auxin and cytokinin signaling pathways across cell lineages.

bioRxiv · Jun 13, 2023 · PreprintPlant Biology

Single-cell analysis resolves the genetic program of primary vascular system formation in hybrid poplar

D. Conde, P. M. Triozzi, W. J. Pereira, H. W. Schmidt, K. M. Balmant, S. A. Knaack, S. Roy, C. Dervinis, M. Kirst

The paper uses single-cell RNA-seq to map the genetic program of primary vascular development in hybrid poplar at single-cell resolution.

bioRxiv · Dec 28, 2021 · PreprintPlant Biology

Temporal change in chromatin accessibility predicts regulators of nodulation in Medicago truncatula

S. A. Knaack, D. Conde, S. Chakraborty, K. M. Balmant, T. B. Irving, L. Gontijo Silva Maia, P. M. Triozzi, C. Dervinis, W. J. Pereira, J. Maeda, H. W. Schmidt, J.-M. Ane, M. Kirst, S. Roy

The paper identifies regulators of legume-rhizobia symbiosis by analyzing temporal chromatin accessibility and gene expression in Medicago truncatula roots.

bioRxiv · Aug 7, 2021Plant Biology

Functional and comparative genomics reveals conserved noncoding sequences in the nitrogen-fixing clade

W. J. Pereira, S. A. Knaack, D. Conde, S. Chakraborty, R. A. Folk, P. M. Triozzi, K. M. Balmant, C. Dervinis, H. W. Schmidt, J.-M. Ane, S. Roy, M. Kirst

The paper identifies conserved noncoding sequences in nitrogen-fixing plants and shows their role in regulating genes involved in root nodule symbiosis.

bioRxiv · Jul 27, 2021Plant Biology

Spatiotemporal cytokinin signaling imaging reveals IPT3 function in nodule development in Medicago truncatula

P. Triozzi, T. B. Irving, H. W. Schmidt, Z. P. Keyser, S. Chakraborty, K. M. Balmant, W. J. Pereira, C. Dervinis, K. S. Mysore, J. Wen, J.-M. Ane, M. Kirst, D. Conde Rodriguez

bioRxiv · Apr 23, 2021Plant Biology

A robust method of nuclei isolation for single-cell RNA sequencing of solid tissues from the plant genus Populus

D. Conde, P. M. Triozzi, K. M. Balmant, A. L. Doty, M. Miranda, A. Boullosa, H. W. Schmidt, W. J. Pereira, C. Dervinis, M. Kirst

The paper presents a method to isolate nuclei from plant tissues for scRNA-seq, overcoming limitations of protoplast isolation in complex tissues.

bioRxiv · Feb 11, 2021Plant Biology