Author

S. Nakaoka

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Ecology· 2 Evolutionary Biology· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 4 Research Focus:host-pathogen & immune response· 3 Research Focus:ecology & biodiversity· 2 Organism:human· 2 Assay:metagenomics· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1

Frequent Co-Authors

K. Kitagawa· 2 shared K. Watashi· 2 shared S. Iwami· 2 shared A. S. Perelson· 1 shared D. KUMAKURA· 1 shared H. Inaba· 1 shared H. Masuya· 1 shared H. Ohashi· 1 shared

Activity by Year

2019-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 22 mutual co-author links

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Curved chords = mutual co-authorship

2 shared papersMicrobiology

K. Kitagawa

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

MicrobiologybioRxivPreprintJun 6, 2023

Multiscale modeling of HBV infection integrating intra- and intercellular viral propagation for analyzing extracellular viral markers

K. Kitagawa, K. Kim, M. Iwamoto…·S. Iwami

This study develops a multiscale mathematical model to predict intrahepatic cccDNA dynamics using serum viral markers, offering a non-invasive method for HBV infection analysis.

DOI 10.1101/2023.06.06.543822

humanstatistical model

𝕏 PostBluesky

EcologybioRxivMay 17, 2021

Energy landscape analysis elucidates the multistability of ecological communities across environmental gradients

K. Suzuki, S. Nakaoka, S. Fukuda, H. Masuya

The paper analyzes ecological community multistability using an energy landscape approach, revealing stable states and transitions in murine gut microbiota across age.

DOI 10.1002/ecm.1469

mousemetagenomics

𝕏 PostBluesky

EcologybioRxivPreprintJan 25, 2021

Extended applicability of causal inference to compositional data by reciprocal logarithmic ratio transformation

D. KUMAKURA, R. Yamaguchi, S. Nakaoka

This paper proposes a reciprocal logarithmic ratio transformation to apply convergent cross-mapping to compositional data, enabling causal inference in ecological studies.

DOI 10.1101/2021.01.25.428037

metagenomicsstatistical model

𝕏 PostBluesky

Evolutionary BiologybioRxivOct 28, 2019

Two strategies underlying the trade-off of hepatitis C virus proliferation: stay-at-home or leaving-home?

S. Iwanami, K. Kitagawa, Y. Asai…·K. Watashi

This study analyzes the trade-off between two HCV proliferation strategies, finding that Jc1-n favors transmission while JFH-1 favors intracellular replication.

DOI 10.1371/journal.pbio.3000562

humanbulk RNA-seq

𝕏 PostBluesky