Author

S. Pilosof

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Ecology· 7 Evolutionary Biology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 8 Research Focus:ecology & biodiversity· 3 Organism:human· 3 Assay:metagenomics· 3 Research Focus:benchmarking· 2 Research Focus:cell type annotation· 2 Research Focus:chromatin & epigenetic regulation· 2 Assay:DNA methylation· 2

Frequent Co-Authors

M. Pascual· 4 shared K. Day· 3 shared K. E. Tiedje· 3 shared Q. He· 3 shared S. Ruybal-Pesantez· 2 shared A. Brown Kav· 1 shared A. Eklöf· 1 shared A. Vitali· 1 shared

Activity by Year

2018-2022 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 11 mutual co-author links

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4 shared papersEcology

M. Pascual

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Author profile →

8 papers

Recent·Most cited

Invasive species modulate the structure and stability of a multilayer mutualistic network.

A. Vitali, S. Ruiz-Suarez, D. Vazquez, M. Schleuning, M. Rodriguez-Cabal, Y. Sasal, S. Pilosof

The paper examines how invasive ungulates alter the structure and stability of a pollination-seed dispersal multilayer network in Patagonia, showing reduced connectivity and increased vulnerability to disturbances.

bioRxiv · Dec 25, 2022Ecology

Ecological network analysis reveals cancer-dependent chaperone-client interaction structure and robustness in the mitochondria

G. Galai, B. Rotblat, S. Pilosof

The paper analyzes chaperone-client interaction networks in cancer to understand their structure and robustness, identifying modular patterns that influence drug response.

bioRxiv · Nov 24, 2022Ecology

Multilayer Networks of Plasmid Genetic Similarity Reveal Potential Pathways of Gene Transmission

J. T. Shapiro, A. Zorea, A. Brown Kav, V. J. Ontiveros, I. Mizrahi, S. Pilosof

The paper constructs a multilayer network of plasmid genetic similarity in cow rumen data to identify gene transmission pathways and mechanisms across hosts.

bioRxiv · Sep 8, 2022Ecology

Frequency-dependent competition between strains imparts resilience to perturbations in a model of Plasmodium falciparum malaria transmission.

Q. He, S. Pilosof, K. E. Tiedje, K. Day, M. Pascual

This paper shows that frequency-dependent selection increases resilience of malaria transmission systems to intervention compared to neutral processes.

bioRxiv · Dec 22, 2020Ecology

The network structure and eco-evolutionary dynamics of CRISPR-induced immune diversification

S. Pilosof, S. A. Alcala-Corona, T. Wang, T. Kim, S. Maslov, R. J. Whitaker, M. Pascual

The paper models CRISPR-mediated host-virus interactions and shows empirical systems exhibit weighted-nested protection networks indicative of host suppression of virus diversification.

bioRxiv · Apr 30, 2020Evolutionary Biology

Identifying flow modules in ecological networks using Infomap

C. Farage, D. Edler, A. Eklöf, M. Rosvall, S. Pilosof

This paper introduces Infomap, a method for identifying flow modules in ecological networks, and provides an R package for its application.

bioRxiv · Apr 14, 2020Ecology

Competition for hosts modulates vast antigenic diversity to generate persistent strain structure in Plasmodium falciparum

S. Pilosof, Q. He, K. E. Tiedje, S. Ruybal-Pesantez, K. Day, M. Pascual

The paper shows immune selection generates persistent genetic modules in Plasmodium falciparum, which function as dynamic strains in host immune space.

bioRxiv · Sep 18, 2018Ecology

Networks of genetic similarity reveal non-neutral processes shape strain structure in Plasmodium falciparum

Q. He, S. Pilosof, K. E. Tiedje, S. Ruybal-Pesantez, Y. Artzy-Randrup, E. B. Baskerville, K. Day, M. Pascual

The paper develops neutral models to analyze genetic structure in Plasmodium falciparum and finds non-neutral strain organization in a Ghanaian population.

bioRxiv · Apr 10, 2018Ecology